View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3988_low_1 (Length: 476)

Name: NF3988_low_1
Description: NF3988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3988_low_1
NF3988_low_1
[»] scaffold0151 (6 HSPs)
scaffold0151 (15-188)||(37554-37727)
scaffold0151 (25-188)||(25037-25200)
scaffold0151 (270-418)||(24806-24955)
scaffold0151 (270-418)||(37323-37472)
scaffold0151 (272-419)||(38272-38422)
scaffold0151 (28-69)||(37754-37795)
[»] chr3 (22 HSPs)
chr3 (15-188)||(38262012-38262185)
chr3 (15-188)||(17341151-17341324)
chr3 (270-454)||(38262250-38262435)
chr3 (272-419)||(38261304-38261453)
chr3 (270-416)||(17341405-17341553)
chr3 (270-420)||(40630533-40630685)
chr3 (280-418)||(17340468-17340612)
chr3 (270-419)||(40630017-40630168)
chr3 (270-419)||(37087112-37087263)
chr3 (273-419)||(6247383-6247531)
chr3 (272-408)||(37088070-37088206)
chr3 (273-420)||(50296204-50296353)
chr3 (273-350)||(9435473-9435550)
chr3 (302-418)||(50297251-50297369)
chr3 (365-419)||(6248458-6248512)
chr3 (275-419)||(37023721-37023867)
chr3 (300-419)||(45583195-45583315)
chr3 (79-137)||(40630347-40630410)
chr3 (367-422)||(45580104-45580159)
chr3 (275-421)||(52985127-52985275)
chr3 (276-418)||(2213922-2214066)
chr3 (338-419)||(3820916-3820997)
[»] chr6 (13 HSPs)
chr6 (15-188)||(20892038-20892211)
chr6 (273-420)||(20891804-20891953)
chr6 (270-353)||(26444553-26444636)
chr6 (270-419)||(15976611-15976762)
chr6 (293-419)||(14456123-14456250)
chr6 (299-421)||(15888968-15889092)
chr6 (275-353)||(14455095-14455173)
chr6 (365-419)||(15981023-15981077)
chr6 (300-353)||(26444794-26444847)
chr6 (301-425)||(20583010-20583136)
chr6 (28-69)||(20892238-20892279)
chr6 (365-418)||(20583979-20584032)
chr6 (288-352)||(646743-646807)
[»] chr8 (29 HSPs)
chr8 (21-166)||(26363252-26363397)
chr8 (270-421)||(26363503-26363655)
chr8 (270-353)||(1192022-1192105)
chr8 (270-421)||(36984143-36984293)
chr8 (270-420)||(39581906-39582058)
chr8 (270-405)||(4377949-4378084)
chr8 (270-353)||(41774686-41774768)
chr8 (272-418)||(45020585-45020732)
chr8 (304-419)||(14055394-14055511)
chr8 (270-419)||(45021556-45021706)
chr8 (275-420)||(14054116-14054261)
chr8 (301-421)||(28301588-28301709)
chr8 (300-418)||(23753259-23753379)
chr8 (300-421)||(26830322-26830444)
chr8 (271-353)||(6572341-6572423)
chr8 (369-419)||(22255573-22255623)
chr8 (270-332)||(44065573-44065634)
chr8 (275-413)||(35562249-35562386)
chr8 (300-353)||(41773724-41773777)
chr8 (270-319)||(44066670-44066719)
chr8 (270-353)||(39580860-39580941)
chr8 (365-421)||(45519495-45519551)
chr8 (275-421)||(23754289-23754436)
chr8 (370-421)||(44296717-44296768)
chr8 (365-421)||(26831447-26831503)
chr8 (284-328)||(41944445-41944489)
chr8 (300-418)||(1190969-1191088)
chr8 (301-419)||(45518167-45518287)
chr8 (361-421)||(39688339-39688400)
[»] chr5 (24 HSPs)
chr5 (15-188)||(182852-183017)
chr5 (270-421)||(2024204-2024356)
chr5 (270-420)||(183097-183247)
chr5 (271-421)||(16799829-16799977)
chr5 (272-353)||(16793598-16793679)
chr5 (270-420)||(2023330-2023479)
chr5 (301-419)||(12949996-12950116)
chr5 (270-419)||(4533132-4533280)
chr5 (293-419)||(29993322-29993449)
chr5 (270-327)||(38107219-38107276)
chr5 (272-421)||(4533971-4534123)
chr5 (270-353)||(29353517-29353599)
chr5 (270-353)||(38107988-38108070)
chr5 (301-419)||(12935838-12935959)
chr5 (271-353)||(5014085-5014167)
chr5 (288-352)||(16228849-16228912)
chr5 (365-419)||(42877086-42877140)
chr5 (28-69)||(182784-182825)
chr5 (292-349)||(12934788-12934845)
chr5 (292-349)||(12948952-12949009)
chr5 (361-413)||(9070679-9070731)
chr5 (273-349)||(42876210-42876286)
chr5 (275-418)||(5015040-5015184)
chr5 (300-421)||(29352487-29352610)
[»] scaffold0008 (4 HSPs)
scaffold0008 (270-425)||(268404-268560)
scaffold0008 (15-61)||(268741-268787)
scaffold0008 (78-135)||(268696-268758)
scaffold0008 (28-69)||(268814-268855)
[»] chr4 (25 HSPs)
chr4 (270-422)||(1961078-1961232)
chr4 (274-419)||(10616000-10616147)
chr4 (270-413)||(6047068-6047212)
chr4 (270-413)||(46170304-46170446)
chr4 (273-413)||(40841998-40842140)
chr4 (272-420)||(56112693-56112843)
chr4 (270-418)||(56113663-56113813)
chr4 (273-420)||(34370676-34370825)
chr4 (270-349)||(2420880-2420958)
chr4 (293-421)||(10614800-10614926)
chr4 (270-351)||(31183822-31183902)
chr4 (275-419)||(18704321-18704468)
chr4 (318-422)||(1960891-1960997)
chr4 (371-418)||(34369664-34369711)
chr4 (370-421)||(39702670-39702721)
chr4 (275-413)||(52035063-52035203)
chr4 (271-353)||(31182685-31182767)
chr4 (273-349)||(39701593-39701669)
chr4 (301-418)||(49700657-49700774)
chr4 (365-421)||(34155895-34155951)
chr4 (365-419)||(18705398-18705452)
chr4 (300-353)||(34157134-34157185)
chr4 (275-353)||(40873023-40873101)
chr4 (271-408)||(40873966-40874104)
chr4 (300-353)||(18667254-18667307)
[»] chr7 (22 HSPs)
chr7 (270-421)||(16957169-16957322)
chr7 (270-420)||(7314157-7314309)
chr7 (270-421)||(42337066-42337219)
chr7 (275-418)||(42338063-42338208)
chr7 (281-420)||(46469139-46469279)
chr7 (300-420)||(17352888-17353009)
chr7 (300-421)||(17353811-17353934)
chr7 (270-324)||(37627558-37627612)
chr7 (272-353)||(5450110-5450190)
chr7 (300-419)||(35960142-35960261)
chr7 (293-418)||(12385419-12385545)
chr7 (270-350)||(7313142-7313221)
chr7 (272-322)||(5441101-5441151)
chr7 (15-61)||(16956950-16956995)
chr7 (365-419)||(40319550-40319604)
chr7 (300-353)||(47508884-47508935)
chr7 (364-421)||(35959078-35959135)
chr7 (365-419)||(40659003-40659057)
chr7 (365-418)||(7313071-7313124)
chr7 (302-397)||(37628493-37628586)
chr7 (302-339)||(47507839-47507876)
chr7 (28-64)||(16956882-16956918)
[»] chr1 (23 HSPs)
chr1 (274-419)||(1532484-1532632)
chr1 (270-420)||(31376527-31376679)
chr1 (273-418)||(43916170-43916311)
chr1 (270-413)||(30106972-30107114)
chr1 (270-413)||(29183364-29183508)
chr1 (276-422)||(43914903-43915049)
chr1 (270-353)||(24033061-24033144)
chr1 (270-420)||(16276874-16277024)
chr1 (270-349)||(22776572-22776651)
chr1 (300-350)||(30105504-30105554)
chr1 (272-341)||(16273814-16273883)
chr1 (301-421)||(5971083-5971205)
chr1 (270-353)||(8051150-8051233)
chr1 (281-353)||(5972180-5972253)
chr1 (270-420)||(24037901-24038051)
chr1 (273-350)||(52142938-52143015)
chr1 (365-408)||(22778642-22778685)
chr1 (270-348)||(43601972-43602049)
chr1 (270-323)||(1075906-1075959)
chr1 (272-348)||(1075005-1075080)
chr1 (301-420)||(1531633-1531754)
chr1 (370-420)||(16273728-16273778)
chr1 (270-351)||(52144217-52144296)
[»] chr2 (20 HSPs)
chr2 (270-411)||(26068898-26069041)
chr2 (301-420)||(20126183-20126304)
chr2 (272-420)||(27849294-27849443)
chr2 (275-408)||(33076168-33076302)
chr2 (273-421)||(3453332-3453482)
chr2 (270-421)||(27848333-27848485)
chr2 (270-340)||(33075264-33075334)
chr2 (302-419)||(3454384-3454504)
chr2 (281-419)||(20127269-20127410)
chr2 (365-420)||(24607784-24607839)
chr2 (15-61)||(26069218-26069264)
chr2 (281-420)||(42702034-42702176)
chr2 (270-339)||(34387944-34388013)
chr2 (272-328)||(44702364-44702420)
chr2 (270-327)||(30793939-30793996)
chr2 (78-114)||(26069199-26069235)
chr2 (370-419)||(3627614-3627663)
chr2 (288-349)||(34386937-34386998)
chr2 (365-413)||(3149226-3149274)
chr2 (275-351)||(3628023-3628099)
[»] scaffold0446 (1 HSPs)
scaffold0446 (272-420)||(11559-11709)
[»] scaffold0203 (3 HSPs)
scaffold0203 (301-421)||(9559-9681)
scaffold0203 (301-421)||(14933-15055)
scaffold0203 (281-419)||(16023-16164)
[»] scaffold1212 (2 HSPs)
scaffold1212 (270-345)||(2183-2258)
scaffold1212 (370-421)||(2132-2183)
[»] scaffold0827 (2 HSPs)
scaffold0827 (300-418)||(3225-3345)
scaffold0827 (275-336)||(2443-2504)
[»] scaffold0050 (2 HSPs)
scaffold0050 (279-353)||(79899-79972)
scaffold0050 (279-339)||(80926-80986)


Alignment Details
Target: scaffold0151 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 37727 - 37554
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37727 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 37628  T
Q  115 tgtttggaaagaggagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 188  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37627 tgtttggaaagagaagatgaaggttattaaaaaggagggagcaatgactgtttggatctcgcacgtgcctcacc 37554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 25200 - 25037
Alignment:
Q  25 gatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattttgtttggaaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25200 gatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattttgtttggaaa 25101  T
Q  125 gaggagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 188  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25100 gagaagatgaaggttattaaaaaggagggagcaatgactgtttggatctcgcacgtgcctcacc 25037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 270 - 418
Target Start/End: Complemental strand, 24955 - 24806
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||| |||    
T  24955 cacaagtggcgtgccacatatggttggctgagtcaaaattgacgttttgcaaaagggggtagacatg-ggggtcacttttgccattttttttaatagggg 24857  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24856 gccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagcc 24806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 270 - 418
Target Start/End: Complemental strand, 37472 - 37323
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||| |||    
T  37472 cacaagtggcgtgccacatatggttggctgagtcaaaattgacgttttgcaaaagggggtagacatg-ggggtcacttttgccattttttttaatagggg 37374  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37373 gccaaaattgcaacttctgcaaacttagggggcaaaaagtacgttttagcc 37323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 272 - 419
Target Start/End: Original strand, 38272 - 38422
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaata-gggg 368  Q
    ||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||         |||| ||||    
T  38272 caggttgcgtgccacatatgtttgactaagtcaaaattgacgttttgcaaaagggggtagacatggagggtcacttttgccatttttttttaataggggg 38371  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38372 ccaaaattgcaacttctgcaaacttaaggggcaaaaagtgcgttttagcct 38422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 37795 - 37754
Alignment:
Q  28 gatgaaataagagaagatggagatgaaggtttgggtctgaat 69  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  37795 gatgaaataagagaagatgaagatgaaagtttgggtcggaat 37754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 38262012 - 38262185
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38262012 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggaaatgaaggtttggaagaggaagatggagattt 38262111  T
Q  115 tgtttggaaagaggagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 188  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38262112 tgtttggaaagagaagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 38262185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 17341151 - 17341324
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17341151 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 17341250  T
Q  115 tgtttggaaagaggagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 188  Q
    | ||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17341251 tttttggaaagagaagatgaaggttattaaaaaagagggagcaatgactgtttggatctcgcacgtgcctcacc 17341324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 270 - 454
Target Start/End: Original strand, 38262250 - 38262435
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg 368  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||  |||||||||||         ||||||||    
T  38262250 cacaggtggcatgccacatatggttgactgagttaaaattgacgttttgcaaaagggggtaaacatgggg--tcacttttgcctttttttttaatagggg 38262347  T
Q  369 -ccaaaattgcaacttctgcaaacttagggggcaaaa-agtgcgttttagcctaatcttactatgcaagcttaatctctgatgtttac 454  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38262348 gccaaaattgcaacttctgcaaacttagggggcaaaaaagtgcgttttagcctaatcttaatatgcaagcttaatctctgatgtttac 38262435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 272 - 419
Target Start/End: Complemental strand, 38261453 - 38261304
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaatagg-ggc 369  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| |||    
T  38261453 caggtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccattttttttaataggtggc 38261354  T
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38261353 caaaattgcaacttctgcaaacttaggggacaaaaagtgcgttttagcct 38261304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 270 - 416
Target Start/End: Original strand, 17341405 - 17341553
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||        |||| |||    
T  17341405 cacaggtgacgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttatcattttttttaatagggg 17341504  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttag 416  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  17341505 gtcaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttag 17341553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 40630533 - 40630685
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |        |||| |||    
T  40630533 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagggggtagacataggggatcacttttgctattttttttaatagggg 40630632  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||||| ||||||||||||||| |||||||||  |||||||||    
T  40630633 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagccta 40630685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 418
Target Start/End: Complemental strand, 17340612 - 17340468
Alignment:
Q  280 atgccacatatggttgactgagtcaaaattgacgttttgcaaaagggg-gtagacatggggggtcacttttgcc----annnnnnnaatagg-ggccaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||            |||||| | |||||    
T  17340612 atgccacatatggttgactgagtcaaaattgacgttttgcaaaaggggaatagacatggggggtcacttttgccttttttttttttaataggagaccaaa 17340513  T
Q  374 attgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17340512 attgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 17340468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 419
Target Start/End: Complemental strand, 40630168 - 40630017
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaat-aggg 367  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||        ||| |||     
T  40630168 cacaggtggcgtgccacatagggttgactgagtcaaaattgacattttgcaaaagggggtagacataggggatcacttttgccattttttttaataaggt 40630069  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||||||||||||||| ||||||||||  ||| |||||||||||||||||||    
T  40630068 gccaaaattgcaacttttgcaaacttaatgggtaaaaagtgcgttttagcct 40630017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 419
Target Start/End: Complemental strand, 37087263 - 37087112
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaataggg- 367  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | |||||||||||  |||||||||        |||||||     
T  37087263 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggggggtagcttttgccattttttctaatagggt 37087164  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| |||||    
T  37087163 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 37087112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 6247531 - 6247383
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggc-c 370  Q
    |||||||||| |||||| | ||||||| ||||||||||| |||||||| |||||| || ||||  ||||||||||||||||        ||||||||  |    
T  6247531 aggtggcatgacacataggattgactgggtcaaaattgaggttttgcagaaggggctaaacataaggggtcacttttgccattttttttaatagggggtc 6247432  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6247431 aaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 6247383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 408
Target Start/End: Original strand, 37088070 - 37088206
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaataggggcca 371  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | |||| |||||| ||||||||||       ||||||||  |    
T  37088070 caggtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacat-gggggtaacttttgccatttttttaatagggggta 37088168  T
Q  372 aaa-ttgcaacttctgcaaacttagggggcaaaaagtg 408  Q
    ||| ||||||||| ||||||||||||||| ||||||||    
T  37088169 aaatttgcaacttttgcaaacttagggggtaaaaagtg 37088206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 273 - 420
Target Start/End: Complemental strand, 50296353 - 50296204
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg-cc 370  Q
    |||||||||| |||||| | ||||||| ||||||||||| ||||||||||||||| || ||||  ||||| ||||||||||        |||||||| ||    
T  50296353 aggtggcatgacacataggattgactgggtcaaaattgaggttttgcaaaaggggctaaacataaggggttacttttgccattttttttaatagggggcc 50296254  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||    
T  50296253 aaaattgcaacttttgcaaacttaaggggcaaaaagtgcattttagccta 50296204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 9435473 - 9435550
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttg 350  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  9435473 aggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaagggggtaaacatagggggtcacttttg 9435550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 302 - 418
Target Start/End: Original strand, 50297251 - 50297369
Alignment:
Q  302 tcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aata-ggggccaaaattgcaacttctgcaaacttaggggg 399  Q
    |||||||||| |||||||| |||||| || ||||  ||||||||||||||||        |||| ||||||||||||||||||| |||||||||||||||    
T  50297251 tcaaaattgaggttttgcataaggggctaaacataaggggtcacttttgccattttttttaataaggggccaaaattgcaacttttgcaaacttaggggg 50297350  T
Q  400 caaaaagtgcgttttagcc 418  Q
    |||||||||||||||||||    
T  50297351 caaaaagtgcgttttagcc 50297369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 6248458 - 6248512
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6248458 ggggccaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcct 6248512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 37023721 - 37023867
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatg-gggggtcacttttgccannnnnnn-aataggggccaa 372  Q
    |||||||| |||||| | |||||  |||||||||||  ||||||||||||||| || ||||| |||||  ||||||||||        || |||||||||    
T  37023721 gtggcatgacacataggtttgaccaagtcaaaattggtgttttgcaaaaggggttaaacatgaggggggaacttttgccattttttttaacaggggccaa 37023820  T
Q  373 aattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||| |||||||||||| || |||||||| |||| |||||    
T  37023821 aattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcct 37023867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 45583195 - 45583315
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg-ccaaaattgcaacttctgcaaacttaggg 397  Q
    |||||||||||||||||| ||||||||| ||||||| || |||||||||| |||        |||||||| ||||||||||||||| |||||||||||||    
T  45583195 agtcaaaattgacgttttacaaaagggg-tagacataggaggtcacttttaccattttttttaatagggggccaaaattgcaacttttgcaaacttaggg 45583293  T
Q  398 ggcaaaaagtgcgttttagcct 419  Q
    |  | |||||| |||| |||||    
T  45583294 gttagaaagtgtgtttaagcct 45583315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 40630347 - 40630410
Alignment:
Q  79 tggagatgaaggtttggaagaggaagatgga-----gattttgtttggaaagaggagatgaagg 137  Q
    ||||||||||||||||||||||||||||| |     |||||||||||||||||| |||||||||    
T  40630347 tggagatgaaggtttggaagaggaagatgaagatttgattttgtttggaaagagaagatgaagg 40630410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 45580159 - 45580104
Alignment:
Q  367 ggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaat 422  Q
    ||||||||||||||||| ||||||||||||| | |||||||| |||| ||||||||    
T  45580159 ggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcctaat 45580104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 421
Target Start/End: Complemental strand, 52985275 - 52985127
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaatagggg-ccaa 372  Q
    |||||||| |||||| | |||||| ||||||| |||| ||||||||||||||| ||  |||||||| ||| |||| |||        |||||||| ||||    
T  52985275 gtggcatggcacataagcttgactaagtcaaagttgaggttttgcaaaaggggataatcatgggggatcatttttaccattttttttaataggggaccaa 52985176  T
Q  373 aattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    ||||| ||||| | ||||||||| ||| |||||||| |||| |||||||    
T  52985175 aattgtaacttttacaaacttagagggtaaaaagtgtgtttaagcctaa 52985127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 418
Target Start/End: Complemental strand, 2214066 - 2213922
Alignment:
Q  276 tggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaa 373  Q
    ||||||| ||| || | |||||| |||||||||||  ||||||||||||||| || ||||| |||||  |||||||||        |||| |||| ||||    
T  2214066 tggcatgacacgtaggcttgactaagtcaaaattggggttttgcaaaaggggctaaacatgaggggtggcttttgccattttttttaatagggggtcaaa 2213967  T
Q  374 attgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||||||||| || ||||||||||||  ||||||| |||| ||||    
T  2213966 attgcaacttttgaaaacttagggggtcaaaagtgggtttaagcc 2213922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 3820997 - 3820916
Alignment:
Q  338 ggggtcacttttgccannnnnnnaataggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||||       |||||||| |||||| ||||| | |  |||||||||| ||||||||||| |||||||||    
T  3820997 ggggtcacttttgccatttttttaataggggtcaaaatcgcaacattttaaaacttagggagcaaaaagtgcattttagcct 3820916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 20892211 - 20892038
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20892211 caaaggagaagatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 20892112  T
Q  115 tgtttggaaagaggagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 188  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20892111 tgtttggaaagagaagatgaaggttattaaaacggagggagcaatgaccgtttggatctcgcacgtgcctcacc 20892038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 273 - 420
Target Start/End: Complemental strand, 20891953 - 20891804
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggcc 370  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||    
T  20891953 aggtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccattttttttaatagggggcc 20891854  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20891853 aaaattgcaacttctgcaaacttagggggcaaaaagtgtgttttagccta 20891804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 26444636 - 26444553
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||||||| |||| ||||||||||||||||||||||    
T  26444636 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaaggaggtaaacatggggggtcacttttgcca 26444553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 419
Target Start/End: Complemental strand, 15976762 - 15976611
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaataggg- 367  Q
    |||| ||||||||||||||||||||||||  |||||||||||| ||||||||||||||| | |||||||||||  |||||||||        |||||||     
T  15976762 cacatgtggcatgccacatatggttgactcggtcaaaattgacattttgcaaaagggggaaaacatggggggtagcttttgccattttttttaatagggt 15976663  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    | |||||||||||||| ||||||||||||||| |||||||| |||| |||||    
T  15976662 gtcaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 15976611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 419
Target Start/End: Original strand, 14456123 - 14456250
Alignment:
Q  293 ttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggccaaaattgcaacttctgcaaac 391  Q
    |||||| ||||||||||||  ||||| ||||||||||| ||||  ||||||||||||||||        ||||||||||||||||| ||||| |||||||    
T  14456123 ttgacttagtcaaaattgaaattttgtaaaagggggtaaacattaggggtcacttttgccattttttttaataggggccaaaattgtaacttttgcaaac 14456222  T
Q  392 ttagggggcaaaaagtgcgttttagcct 419  Q
    || ||||| ||||||||||||| |||||    
T  14456223 tttgggggtaaaaagtgcgtttaagcct 14456250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 421
Target Start/End: Complemental strand, 15889092 - 15888968
Alignment:
Q  299 gagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnna--atagggg-ccaaaattgcaacttctgcaaacttag 395  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||| |          ||||||| ||||||||||||| | |||||||||||    
T  15889092 gagtcaaaattgacgttttgcaaaagggg-tagacatgggaggtcacttttgctatttttttttcatagggggccaaaattgcaacatttgcaaacttag 15888994  T
Q  396 ggggcaaaaagtgcgttttagcctaa 421  Q
    ||||||||| |||||||||| |||||    
T  15888993 ggggcaaaacgtgcgttttaacctaa 15888968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 14455173 - 14455095
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||| |||||| | |||||| |||||||||||| |||||||||||||||| | |||||  |||||| ||||||||    
T  14455173 gtggcatgacacataggcttgactaagtcaaaattgaggttttgcaaaagggggcaaacatgaagggtcatttttgcca 14455095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 15981023 - 15981077
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||    
T  15981023 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 15981077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 26444794 - 26444847
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    ||||||||||||  ||||||||||||||||| |||||||||||| |||||||||    
T  26444794 agtcaaaattgagcttttgcaaaagggggtaaacatggggggtcgcttttgcca 26444847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 425
Target Start/End: Complemental strand, 20583136 - 20583010
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggc-caaaattgcaacttctgcaaacttagggg 398  Q
    ||||||||||| ||||| ||||||||| ||  |||| ||||||||||||||||        ||||||||  |||||||||||||| | ||||||||||||    
T  20583136 gtcaaaattgaagttttacaaaaggggataatcatgaggggtcacttttgccattttttttaatagggggtcaaaattgcaacttttccaaacttagggg 20583037  T
Q  399 gcaaaaagtgcgttttagcctaatctt 425  Q
      |||||||| |||| ||||| |||||    
T  20583036 ataaaaagtgtgtttaagccttatctt 20583010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 20892279 - 20892238
Alignment:
Q  28 gatgaaataagagaagatggagatgaaggtttgggtctgaat 69  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  20892279 gatgaaataagagaagatgaagatgaaggtttgggtcggaat 20892238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 20583979 - 20584032
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||| |||||||||||||| ||||||||||| ||| ||||||| ||||| ||||    
T  20583979 ggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtacgtttaagcc 20584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 646743 - 646807
Alignment:
Q  288 tatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcc 352  Q
    ||||||||||||  |||||||||   |||||||||| |||||| |||||| ||||| ||||||||    
T  646743 tatggttgactggatcaaaattgggattttgcaaaatggggtaaacatggagggtcccttttgcc 646807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 26363252 - 26363397
Alignment:
Q  21 agaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattttgtttg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  26363252 agaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcaaaaatagagatgaaggtttggaagaggaagatgaagattttgtttg 26363351  T
Q  121 gaaagaggagatgaaggttattaaaaaggagggagcaatgaccgtt 166  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  26363352 gaaagagaagatgaaggttattaaaaaggagggagcaatgaccgtt 26363397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 270 - 421
Target Start/End: Original strand, 26363503 - 26363655
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-gggg 368  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||       |||| ||||    
T  26363503 cacaggtggcgtgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagatattgggggtcacttttgccatttttttaataggggg 26363602  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26363603 ccaaaattgcaacttctgcaaatttagggggcaaaaagtgcgttttagcctaa 26363655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 1192022 - 1192105
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  1192022 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaagggggtaaacatggggggtcacttttgcca 1192105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 36984293 - 36984143
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaatagg-gg 368  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||| ||||  |||||||||||||||        || ||| |     
T  36984293 cacaggtggcatgacacatatggttgattgagtcaaaattgaggttttgcaaaaggcggtaaacat--ggggtcacttttgccgtttttttaaaaggaga 36984196  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
     |||||||||||||| |||||||||||  || ||||||||||||| |||||||    
T  36984195 tcaaaattgcaacttttgcaaacttagtaggtaaaaagtgcgtttaagcctaa 36984143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 39581906 - 39582058
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaataggg 367  Q
    ||||||||||||||||  |||||||||||| ||||||||||  |||||||| ||| ||||| |||||| |||||||||||||||         ||  |||    
T  39581906 cacaggtggcatgccaagtatggttgactgggtcaaaattggggttttgcagaagagggtaaacatggagggtcacttttgccattttttttaaaagggg 39582005  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||||| ||||||||||||| | |||||||| |||| ||||||    
T  39582006 gccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagccta 39582058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 405
Target Start/End: Original strand, 4377949 - 4378084
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaat-agggg 368  Q
    |||||||||| |||||||||  |||||  ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||       ||| |||||    
T  4377949 cacaggtggcgtgccacatacagttgatcgagtcgaaattgacgttttgcaaaa-ggggtagacatgggaggtcacttttgccatttttttaataagggg 4378047  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaa 405  Q
    |||||||| |||| | |  ||||||||||||||||||    
T  4378048 ccaaaattacaacctttataaacttagggggcaaaaa 4378084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 41774686 - 41774768
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||| | || |||||||||||||||||    
T  41774686 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgcaaaagggagtaaatat-gggggtcacttttgcca 41774768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 418
Target Start/End: Complemental strand, 45020732 - 45020585
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggc 369  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | |||| ||||||  |||||||||        |||| |||||    
T  45020732 caggtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacat-gggggtagcttttgccattttttttaatagggggc 45020634  T
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
     ||||||||||||| ||||||||||| ||| |||||||| |||| ||||    
T  45020633 aaaaattgcaacttttgcaaacttagagggtaaaaagtgagtttaagcc 45020585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 14055394 - 14055511
Alignment:
Q  304 aaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn--aataggggccaaaattgcaacttctgcaaacttagggggca 401  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| ||          ||||||||||||||||||||||| ||||||||||||||| |    
T  14055394 aaaattgacgttttacaaaagggggtagacatagggggtcacttttaccttttttttttaataggggccaaaattgcaacttttgcaaacttagggggta 14055493  T
Q  402 aaaagtgcgttttagcct 419  Q
     |||||| |||| |||||    
T  14055494 gaaagtgtgtttaagcct 14055511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 419
Target Start/End: Original strand, 45021556 - 45021706
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg 368  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | ||||||||| |  |||||| ||        ||||||||    
T  45021556 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggggg-tagcttttgtcattttttttaatagggg 45021654  T
Q  369 c-caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
      |||||||||||||| | ||||||||||||| |||||||| |||| |||||    
T  45021655 gtcaaaattgcaacttttacaaacttagggggtaaaaagtgagtttaagcct 45021706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 420
Target Start/End: Complemental strand, 14054261 - 14054116
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaataggggccaaaa 374  Q
    |||||||| |||||| | ||||   |||||||||||  ||||||||||||||| || ||||| ||||  | ||||||||       |||||| |||||||    
T  14054261 gtggcatgacacataggtttgatcaagtcaaaattggtgttttgcaaaaggggctaaacatgaggggggatttttgccatttttttaataggagccaaaa 14054162  T
Q  375 ttgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    ||||||||| |||||||||||| || |||||||| |||| ||||||    
T  14054161 ttgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagccta 14054116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 28301588 - 28301709
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggccaaaattgcaacttctgcaaacttaggggg 399  Q
    ||||||||||  ||||||||||||||| || ||||| |||||||||||||| |        || |||||| ||||||||||||| |||||||||||| ||    
T  28301588 gtcaaaattggagttttgcaaaaggggctaaacatgaggggtcacttttgctattttttttaaaaggggctaaaattgcaacttttgcaaacttaggagg 28301687  T
Q  400 caaaaagtgcgttttagcctaa 421  Q
     ||||||||||||| |||||||    
T  28301688 taaaaagtgcgtttaagcctaa 28301709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 418
Target Start/End: Complemental strand, 23753379 - 23753259
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg-ccaaaattgcaacttctgcaaacttaggg 397  Q
    |||||||||||||||||||||||||||| || | |||||  |||||||||||||        |||||||| ||||||||||||||| | |||||||||||    
T  23753379 agtcaaaattgacgttttgcaaaaggggataaatatgggatgtcacttttgccattttttttaatagggggccaaaattgcaacttttacaaacttaggg 23753280  T
Q  398 ggcaaaaagtgcgttttagcc 418  Q
    || |||||||| |||| ||||    
T  23753279 ggtaaaaagtgtgtttaagcc 23753259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 26830444 - 26830322
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-ggggccaaaattgcaacttctgcaaacttagggg 398  Q
    |||||||||||  |||||||||||||||||| ||||||||| | ||||||||||       |||| |||| ||||||||| || | ||||||| ||||||    
T  26830444 agtcaaaattggggttttgcaaaagggggtaaacatgggggataacttttgccatttttttaatagggggtcaaaattgctacgtttgcaaacctagggg 26830345  T
Q  399 gcaaaaagtgcgttttagcctaa 421  Q
    | |||||||| |||| |||||||    
T  26830344 gtaaaaagtgtgtttaagcctaa 26830322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 6572341 - 6572423
Alignment:
Q  271 acaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||| ||||||  ||||||  ||| |||||||| ||||||||||||||| || ||||| ||||||| ||||||||    
T  6572341 acaggtggcatgacacataacgttgaccaagttaaaattgaggttttgcaaaaggggctaaacatgaggggtcatttttgcca 6572423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 22255623 - 22255573
Alignment:
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  22255623 ccaaaattgcaacttttgcaaacttagggggcgaaaagtgcgtttaagcct 22255573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 44065634 - 44065573
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtaga 332  Q
    |||| ||||||||||||||||| |||  |||||||||||||||||||||||||||||| ||||    
T  44065634 cacatgtggcatgccacatatgtttgt-tgagtcaaaattgacgttttgcaaaaggggataga 44065573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 35562386 - 35562249
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaataggggccaaaa 374  Q
    |||||||| |||||| | |||||  |||||||||||| |||||| |||||||  || ||||| |||   ||||||||||       |||||||| |||||    
T  35562386 gtggcatgacacataggtttgaccaagtcaaaattgatgttttgtaaaagggtctaaacatgagggaa-acttttgccatttttttaataggggtcaaaa 35562288  T
Q  375 ttgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    ||||||||| ||||||||||| ||| |||||||| ||||    
T  35562287 ttgcaacttttgcaaacttagagggtaaaaagtgtgttt 35562249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 41773777 - 41773724
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    ||||||||||||  ||||||||||||||||| |||||||| |||||||||||||    
T  41773777 agtcaaaattgagcttttgcaaaagggggtaaacatggggagtcacttttgcca 41773724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 44066670 - 44066719
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgc 319  Q
    |||| ||||||| ||||||||||||||||||| |||||||||||||||||    
T  44066670 cacacgtggcataccacatatggttgactgagacaaaattgacgttttgc 44066719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 39580941 - 39580860
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||| ||||||| |||  |||||||||||| ||||||||||| |||||||||||||| ||| ||||  | ||||||||||||||    
T  39580941 cacatgtggcataccaagtatggttgactgggtcaaaattgatgttttgcaaaagggagtaaacat--gaggtcacttttgcca 39580860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 45519495 - 45519551
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    ||||||||||||||||||| |||||| |||| ||| ||||||||||||| |||||||    
T  45519495 ggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagcctaa 45519551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 421
Target Start/End: Original strand, 23754289 - 23754436
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaa 372  Q
    ||||| || |||||| | |||||| ||| |||||||| ||||||||||| ||| || ||||||||||||||||||| ||        |||| |||||| |    
T  23754289 gtggcgtgacacataagtttgactaagttaaaattgaggttttgcaaaaagggata-acatggggggtcacttttgtcattttttttaatagggggccca 23754387  T
Q  373 aattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    ||||||||||| ||||||||||| |||  |||||| ||||| |||||||    
T  23754388 aattgcaacttttgcaaacttagagggttaaaagtacgtttaagcctaa 23754436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 44296768 - 44296717
Alignment:
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||| |||||||||| |||| ||||||||||||| |||||||    
T  44296768 caaaattgcaacttttgcaaacttaaggggtaaaaagtgcgtttaagcctaa 44296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 26831447 - 26831503
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||| | |||| ||||||||||||||| |||||||| |||| |||||||    
T  26831447 ggggccaaaattactacttttgcaaacttagggggtaaaaagtgtgtttaagcctaa 26831503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 41944489 - 41944445
Alignment:
Q  284 cacatatggttgactgagtcaaaattgacgttttgcaaaaggggg 328  Q
    |||||||||||||||  |||||||| |||||||||||||||||||    
T  41944489 cacatatggttgactcggtcaaaatcgacgttttgcaaaaggggg 41944445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 418
Target Start/End: Complemental strand, 1191088 - 1190969
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaataggg-gccaaaattgcaacttctgcaaacttaggg 397  Q
    ||||||||||||  |||||||||| |||||| |||| |||||||||||||||||        ||||||| ||||||||||| |||| ||||||||||| |    
T  1191088 agtcaaaattgaacttttgcaaaaaggggtaaacat-gggggtcacttttgccattttttttaatagggagccaaaattgctacttttgcaaacttagag 1190990  T
Q  398 ggcaaaaagtgcgttttagcc 418  Q
    ||  ||||||| |||| ||||    
T  1190989 ggtgaaaagtgagtttaagcc 1190969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 45518287 - 45518167
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaaattgcaacttctgcaaacttagggg 398  Q
    |||||||||||  |||||||||||||| || | ||||||||||| ||||||||        |||| |||| ||||||||||||||||||||| |||| ||    
T  45518287 gtcaaaattgatcttttgcaaaaggggttaaatatggggggtcatttttgccactttttttaatagggggtcaaaattgcaacttctgcaaagttagagg 45518188  T
Q  399 gcaaaaagtgcgttttagcct 419  Q
      |||||||| |||| |||||    
T  45518187 ataaaaagtgtgtttaagcct 45518167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 39688400 - 39688339
Alignment:
Q  361 aatagggg-ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||| ||||||||||||||| |||||||||| ||||  ||||||| |||| |||||||    
T  39688400 aataggggaccaaaattgcaacttttgcaaacttaaggggtcaaaagtgggtttaagcctaa 39688339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 182852 - 183017
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtctgaatcttcgaaaatggagatgaaggtttggaagaggaagatggagattt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||      ||||||||||||||||||||| ||||||    
T  182852 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgggtcggaatcttcgagaatg------aaggtttggaagaggaagatgaagattt 182945  T
Q  115 tgtttggaaagaggagatgaaggttattaaaaaggagggagcaatgaccgtttggatctcgcacgtgcctcacc 188  Q
    ||||||||||||| |||||||||||||||||| |||||  |  || |||||||||| |||||||||||||||||    
T  182946 tgtttggaaagagaagatgaaggttattaaaa-ggaggt-gatattaccgtttggagctcgcacgtgcctcacc 183017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 270 - 421
Target Start/End: Original strand, 2024204 - 2024356
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaatagggg- 368  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||| ||| ||||||||       ||||||||     
T  2024204 cacaggtggcatgccacatacggttgactgagtcaaaattgacgttttgcaaaagggggtagacataagggatcatttttgccatttttttaatagggga 2024303  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
     |||||||||||||| ||||||||||||||| |||||||| |||| |||||||    
T  2024304 acaaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagcctaa 2024356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 183097 - 183247
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||        |||| |||    
T  183097 cacaggtggcgtgccacataggattgactgagtcaaaattgacgttttgcaaaagggggtagacat--ggggtcacttttgccattttttttaatagggg 183194  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  183195 gccaaaattgcaacttttgcaaacttaaggggcaaaaagcgcgttttagccta 183247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 271 - 421
Target Start/End: Original strand, 16799829 - 16799977
Alignment:
Q  271 acaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-ggggc 369  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||  | ||||||||||||||||       |||| ||||     
T  16799829 acaggtggcgtgccacatatggttgactgagtcaaaattgaccttttgcaaaa-ggggtagac--gtggggtcacttttgccatttttttaatagggggt 16799925  T
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||| |||||||    
T  16799926 caaaattgcaacttttgcaaacttaagggacaaaaagtgggtttaagcctaa 16799977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 16793679 - 16793598
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| || || ||||||||||    
T  16793679 caggtggcgtgccacatatggttgactgagtcaaaattgatcttttgcaaaagggggtagacatgaggagttacttttgcca 16793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 420
Target Start/End: Complemental strand, 2023479 - 2023330
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||| ||  ||||||||||||||||        |||| |||    
T  2023479 cacaggtggcatgccacatatggttgaccaagttaaaattgacgttttgcaaaa-ggggtagatat--ggggtcacttttgccattttttttaatagggg 2023383  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||||| || |||||||||||| ||| |||| |||| ||||||    
T  2023382 gccaaaattgcaacttttgtaaacttagggggtaaatagtgggtttaagccta 2023330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 12949996 - 12950116
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg-ccaaaattgcaacttctgcaaacttagggg 398  Q
    ||||||||||| |||||||| |||||| || ||||| ||||||||||||||||        |||||||| ||| ||||||||||| ||||||||||||||    
T  12949996 gtcaaaattgaggttttgcagaaggggctaaacatgaggggtcacttttgccattttttttaataggggaccataattgcaacttttgcaaacttagggg 12950095  T
Q  399 gcaaaaagtgcgttttagcct 419  Q
    |||||||||||||||||||||    
T  12950096 gcaaaaagtgcgttttagcct 12950116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 419
Target Start/End: Complemental strand, 4533280 - 4533132
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg 368  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | |||||  |  |  |||||||||        ||||||||    
T  4533280 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatgatg--tagcttttgccattttttttaatagggg 4533183  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| |||||    
T  4533182 ccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 4533132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 419
Target Start/End: Complemental strand, 29993449 - 29993322
Alignment:
Q  293 ttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaataggg-gccaaaattgcaacttctgcaaac 391  Q
    |||||| |||||||||||| ||||||||||| ||| || ||||||||||||||||||||||       ||||||| ||||||||| |||||| |||||||    
T  29993449 ttgactaagtcaaaattgaggttttgcaaaatgggataaacatggggggtcacttttgccatttttttaatagggtgccaaaattacaacttttgcaaac 29993350  T
Q  392 ttagggggcaaaaagtgcgttttagcct 419  Q
    |||| |||  |||||||||||| |||||    
T  29993349 ttagagggttaaaagtgcgtttaagcct 29993322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 38107276 - 38107219
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggg 327  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38107276 cacaggtggcatgccacatatggttgaccgagtcaaaattgacgttttgcaaaagggg 38107219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 421
Target Start/End: Original strand, 4533971 - 4534123
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaat-agggg 368  Q
    ||||||||||||||||||| |||||||  |||||||| |||||||| |||||||||| | |||||||||||  |||||||||         ||| | |||    
T  4533971 caggtggcatgccacatatagttgactcggtcaaaatcgacgttttacaaaagggggaaaacatggggggtagcttttgccatttttttttaataaaggg 4534070  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    ||||||||||||||| ||||||||||||||| ||||||||  ||| |||||||    
T  4534071 ccaaaattgcaacttttgcaaacttagggggtaaaaagtgaatttaagcctaa 4534123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 29353517 - 29353599
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||| |||| |||||| |||| |||||||||||||||||    
T  29353517 cacaggtggcatgccacatatggttgactgggtcaaaattgagcttttgtaaaatggggtaaacat-gggggtcacttttgcca 29353599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 38107988 - 38108070
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||  ||||||| ||||||||    
T  38107988 cacaggtggcatgccacatacggtttactg-gtcaaaattgacgttttgcaaaagagggtagacataaggggtcatttttgcca 38108070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 12935838 - 12935959
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn--aatagggg-ccaaaattgcaacttctgcaaacttaggg 397  Q
    ||||||||||| |||||||| |||||| || ||||| ||||||||||||||||         |||||||| ||| ||||||||||| |||||||||||||    
T  12935838 gtcaaaattgaggttttgcagaaggggctaaacatgaggggtcacttttgccatttttttttaataggggaccataattgcaacttttgcaaacttaggg 12935937  T
Q  398 ggcaaaaagtgcgttttagcct 419  Q
    |||||||||||| |||||||||    
T  12935938 ggcaaaaagtgcattttagcct 12935959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 5014167 - 5014085
Alignment:
Q  271 acaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||| ||| ||  ||||||   ||||||||||| ||||||||||||||| || ||||| ||||||||||||||||    
T  5014167 acaggtggcatgacacgtaacgttgaccaggtcaaaattgaggttttgcaaaaggggctaaacatgaggggtcacttttgcca 5014085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 16228912 - 16228849
Alignment:
Q  288 tatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcc 352  Q
    |||||||||||| ||||||||||| |||||||||||||| ||| |||| | ||||||||||||||    
T  16228912 tatggttgactgggtcaaaattgaggttttgcaaaagggtgtaaacat-gagggtcacttttgcc 16228849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 42877086 - 42877140
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||| ||||||| |||||| |||||||||| | ||||||||||||||||||||||    
T  42877086 ggggtcaaaattacaacttttgcaaacttaagaggcaaaaagtgcgttttagcct 42877140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 182784 - 182825
Alignment:
Q  28 gatgaaataagagaagatggagatgaaggtttgggtctgaat 69  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  182784 gatgaaataagagaagatgaagatgaaggtttgggtcggaat 182825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 12934845 - 12934788
Alignment:
Q  292 gttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcactttt 349  Q
    |||||| ||||||||||||| ||||||||||||||| || ||||  ||||||||||||    
T  12934845 gttgaccgagtcaaaattgaggttttgcaaaaggggataaacataaggggtcactttt 12934788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 12949009 - 12948952
Alignment:
Q  292 gttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcactttt 349  Q
    |||||| ||||||||||||| ||||||||||||||| || ||||  ||||||||||||    
T  12949009 gttgaccgagtcaaaattgaggttttgcaaaaggggataaacataaggggtcactttt 12948952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 9070731 - 9070679
Alignment:
Q  361 aataggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    |||||||||||||||| |||||| |||||| |||| ||| |||||||||||||    
T  9070731 aataggggccaaaattacaacttttgcaaaattagagggtaaaaagtgcgttt 9070679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 42876286 - 42876210
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcactttt 349  Q
    |||||||||| |||||| | || |||  ||||||||||| ||||||||||||||| || |||| | |||||||||||    
T  42876286 aggtggcatgacacataggattaacttggtcaaaattgaggttttgcaaaaggggctaaacatagagggtcactttt 42876210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 418
Target Start/End: Original strand, 5015040 - 5015184
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggccaaa 373  Q
    |||||||| ||| ||||||||||   ||||||||||| ||||||||||||    || |||||  ||| |||||||||||        |||||||||||||    
T  5015040 gtggcatgacacctatggttgaccaggtcaaaattgaggttttgcaaaagaaactaaacatgaagggccacttttgccattttttttaataggggccaaa 5015139  T
Q  374 attgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||||||||| | |||||||| |||  |||||||| |||| ||||    
T  5015140 attgcaacttttacaaacttaagggttaaaaagtgagtttaagcc 5015184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 29352610 - 29352487
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaaattgcaacttctgcaaacttaggg 397  Q
    |||||||||| |  ||||||||||||||||| | ||||||||||| ||||||||        |||| |||||||||||||| |||| |||||| |||| |    
T  29352610 agtcaaaattaagcttttgcaaaagggggtaaatatggggggtcatttttgccattttttttaatagggggccaaaattgctacttttgcaaatttagag 29352511  T
Q  398 ggcaaaaagtgcgttttagcctaa 421  Q
    ||  ||||||| |||| |||||||    
T  29352510 ggtgaaaagtgggtttaagcctaa 29352487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 270 - 425
Target Start/End: Complemental strand, 268560 - 268404
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-gggg 368  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||       |||| ||||    
T  268560 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaagggggtagacataggggatcacttttgccatttttttaataggggg 268461  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaatctt 425  Q
    ||||||||||||||| |||||||||| | || |||||||||||||||||||| ||||    
T  268460 ccaaaattgcaacttttgcaaacttaagaggtaaaaagtgcgttttagcctattctt 268404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 268787 - 268741
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgg 61  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  268787 caaaggaaaggatgatgaaataagagaagatggagatgaaggtttgg 268741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 268758 - 268696
Alignment:
Q  78 atggagatgaaggtttggaagaggaagatgga-----gattttgtttggaaagaggagatgaa 135  Q
    |||||||||||||||||||||||||||||| |     |||||||||||||||||| |||||||    
T  268758 atggagatgaaggtttggaagaggaagatgaagatttgattttgtttggaaagagaagatgaa 268696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 268855 - 268814
Alignment:
Q  28 gatgaaataagagaagatggagatgaaggtttgggtctgaat 69  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  268855 gatgaaataagagaagatgaagatgaaggtttgggtcggaat 268814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 270 - 422
Target Start/End: Original strand, 1961078 - 1961232
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||        |||| |||    
T  1961078 cacaggtggcgtgccacatagggttgactgagtcaaaattgacgttttgcaaaaaggggtagacataggggatcacttttgccattttttttaatagggg 1961177  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaat 422  Q
    |||||||||||||||| ||||||||||||||| |||||||||  |||||||||||    
T  1961178 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgcactttagcctaat 1961232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 274 - 419
Target Start/End: Original strand, 10616000 - 10616147
Alignment:
Q  274 ggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggcca 371  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||| |||| ||    
T  10616000 ggtggcgtgccacatatggttgacttagtcaaaattgacgttttgcaaaagggggtagacatgggaggtcacttttgccattttttttaatagggggtca 10616099  T
Q  372 aaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||||||||||| |||||| |||||||| | |||||| |||| |||||    
T  10616100 aaattgcaacttttgcaaatttagggggtagaaagtgtgtttaagcct 10616147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 270 - 413
Target Start/End: Complemental strand, 6047212 - 6047068
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||  | ||||| ||||||||        |||| |||    
T  6047212 cacaggtggcatgccacatacggttgactgagtcaaaattgacgttttgcaaaa-ggggtagacataagaggtcatttttgccattttttttaatagggg 6047114  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  6047113 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgggttt 6047068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 270 - 413
Target Start/End: Complemental strand, 46170446 - 46170304
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaatagggg 368  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||        |||||||     
T  46170446 cacaagtgacatgccacatacggttgactgagtcaaaattgacgttttgcaaaagagggtagacat--ggggtcacttttgccattttttttaataggga 46170349  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    |||||||||||||||| ||||||||||| || |||||||| ||||    
T  46170348 ccaaaattgcaacttccgcaaacttaggaggtaaaaagtgggttt 46170304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 273 - 413
Target Start/End: Complemental strand, 40842140 - 40841998
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaatagggg-cc 370  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||        || ||||| ||    
T  40842140 aggtggcatgacacatatagttgactgagtcaaaattgaggttttgcaaaaaggggtaaacatagggggtcacttttgccattttttttaaaaggggacc 40842041  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    ||||||||||||| ||||||||||| |||  ||||||| ||||    
T  40842040 aaaattgcaacttttgcaaacttagagggtgaaaagtgtgttt 40841998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 420
Target Start/End: Complemental strand, 56112843 - 56112693
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggc 369  Q
    ||||||||||||||||||||| |||||  |||||||| ||||||||| ||||||||| | |||||||||||  |||||||||        |||| |||||    
T  56112843 caggtggcatgccacatatggctgactcggtcaaaatcgacgttttgaaaaagggggaaaacatggggggtagcttttgccattttttttaatagggggc 56112744  T
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
     ||||||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  56112743 taaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 56112693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 418
Target Start/End: Original strand, 56113663 - 56113813
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||| ||||||||||||||||| ||||||  |||||||| ||||||||| ||||||||| | |||||||||||  |||||||||        |||| |||    
T  56113663 cacatgtggcatgccacatatgattgactcggtcaaaatcgacgttttgtaaaagggggaaaacatggggggtagcttttgccattttttttaatagggg 56113762  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| ||||    
T  56113763 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcc 56113813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 420
Target Start/End: Original strand, 34370676 - 34370825
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aata-ggggcc 370  Q
    |||||||||| |||||| | ||||||| |||||||||||  ||||||| |||||| || ||||  ||||||||||||||||        |||| ||||||    
T  34370676 aggtggcatgacacataggattgactgggtcaaaattgagattttgcagaaggggctaaacataaggggtcacttttgccaatttttttaataaggggcc 34370775  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||||    
T  34370776 aaaattgcaacttttgtaaacttagggggcaaaaggtgcgttttagccta 34370825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 2420880 - 2420958
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcactttt 349  Q
    |||||||||| |||||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||    
T  2420880 cacaggtggcgtgccacatatggttgacttagtcaaaattgac-atatgcaaaagggggtagacatggggggtcactttt 2420958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 293 - 421
Target Start/End: Complemental strand, 10614926 - 10614800
Alignment:
Q  293 ttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaatagggg-ccaaaattgcaacttctgcaaac 391  Q
    |||||| |||||||||||| ||||||||||||||| |||||||||||  ||||||||||||       || ||||| ||||||||||||||| |||||||    
T  10614926 ttgacttagtcaaaattgatgttttgcaaaagggg-tagacatgggg--tcacttttgccatttttttaacagggggccaaaattgcaacttttgcaaac 10614830  T
Q  392 ttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||| |||||||| |||||||| |||||||    
T  10614829 ttagagggcaaaatgtgcgtttaagcctaa 10614800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 31183822 - 31183902
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgc 351  Q
    |||| |||||||||||  |||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  31183822 cacaagtggcatgccaagtatggttgactgggtcaaaattgatgttttgcaaaagggggtaaacat-gggggtcacttttgc 31183902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 18704321 - 18704468
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaata-ggggcca 371  Q
    |||||||| |||||| | |||||| |||||||||||| |||||||||||||||| | ||||| ||||||| ||||||||         |||| |||||||    
T  18704321 gtggcatgacacataggcttgactaagtcaaaattgaggttttgcaaaagggggcaaacatgaggggtcatttttgccatttttttttaatatggggcca 18704420  T
Q  372 aaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||| |||| |||||| |||||||| ||| ||||||||| |||||    
T  18704421 aaattgctacttttgcaaaattagggggtaaatagtgcgtttaagcct 18704468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 422
Target Start/End: Complemental strand, 1960997 - 1960891
Alignment:
Q  318 gcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggg-gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgtttta 415  Q
    |||||| ||||||||||| |||| ||||||||||||        ||||||| |||||||||||||||| ||||||||||  ||| |||||||||||||||    
T  1960997 gcaaaaaggggtagacataggggatcacttttgccattttttttaatagggtgccaaaattgcaacttttgcaaacttaatgggtaaaaagtgcgtttta 1960898  T
Q  416 gcctaat 422  Q
    |||||||    
T  1960897 gcctaat 1960891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 34369711 - 34369664
Alignment:
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||    
T  34369711 aaaattacaacttttgcaaacttagggggcaaaaagtgcgttttagcc 34369664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 39702670 - 39702721
Alignment:
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  39702670 caaaattgcaacttttgcaaacttaacgggcaaaaagtgcgttttagcctaa 39702721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 52035063 - 52035203
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaa 372  Q
    |||||||| || |||  ||||||  |||||||||||| ||||||||||||||| || ||||| ||||||| ||||||||        |||| ||||||||    
T  52035063 gtggcatgacatataacgttgaccaagtcaaaattgaggttttgcaaaaggggctaaacatgaggggtcatttttgccattttttttaatagggggccaa 52035162  T
Q  373 aattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    ||||||||||| |||||| ||| |||| |||||||| ||||    
T  52035163 aattgcaacttttgcaaatttaaggggtaaaaagtgggttt 52035203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 31182767 - 31182685
Alignment:
Q  271 acaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||| |||||||| |  |||||||||||| ||||||||||  |||||||| ||||||||| |||||  |||||||||||||||    
T  31182767 acagatggcatgcaaagtatggttgactgggtcaaaattggggttttgcagaagggggtaaacatgaagggtcacttttgcca 31182685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 39701669 - 39701593
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcactttt 349  Q
    |||||||||| |||||| | |||| || ||||||||||| |||||| |||||||| || |||||| |||||||||||    
T  39701669 aggtggcatgacacataggattgattgggtcaaaattgaggttttgtaaaaggggctaaacatggagggtcactttt 39701593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 49700657 - 49700774
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaataggggccaaaattgcaacttctgcaaacttagggggc 400  Q
    ||||||||||  ||||||||||||||| || |||||  ||| |||||||||||       || | |||| ||||||||||||| ||||||| |||||||     
T  49700657 gtcaaaattggagttttgcaaaaggggctaaacatgatgggccacttttgccatttttttaaaaagggctaaaattgcaacttttgcaaacatagggggt 49700756  T
Q  401 aaaaagtgcgttttagcc 418  Q
    |||||||| |||| ||||    
T  49700757 aaaaagtgtgtttaagcc 49700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 34155951 - 34155895
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    ||||| ||||||||||||| || |||||||||||| |||||||| |||| |||||||    
T  34155951 ggggctaaaattgcaacttttgtaaacttagggggtaaaaagtgtgtttaagcctaa 34155895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 18705398 - 18705452
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||| ||||||||| |||| ||||||||||||||| ||| ||||||||| |||||    
T  18705398 ggggtcaaaattgctacttttgcaaacttagggggtaaatagtgcgtttaagcct 18705452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 34157134 - 34157185
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    ||||||||||||| ||||| |||||||| |||||||  ||||||||||||||||    
T  34157134 agtcaaaattgaccttttgtaaaaggggctagacat--ggggtcacttttgcca 34157185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 40873101 - 40873023
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||| ||| | ||||||||   ||||||||||| ||||||||||| ||| || ||||| ||| ||||||||||||    
T  40873101 gtggcatgacacttttggttgaccaggtcaaaattgaggttttgcaaaatgggttaaacatgagggttcacttttgcca 40873023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 408
Target Start/End: Original strand, 40873966 - 40874104
Alignment:
Q  271 acaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggg-g 368  Q
    |||||||||||| ||| ||  ||||||   |||||| |||| |||||| ||||||||||| ||||||||| || |||||||||        ||||||  |    
T  40873966 acaggtggcatgacacgtaacgttgaccaggtcaaagttgaggttttgtaaaagggggtaaacatggggg-tcgcttttgccattttttttaataggtag 40874064  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtg 408  Q
    ||||||||||||||| |||||||||||||||  |||||||    
T  40874065 ccaaaattgcaacttttgcaaacttagggggtgaaaagtg 40874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 18667254 - 18667307
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||| ||||||| |||||||| | | |||| |||||||||||||||    
T  18667254 agtcaaaattgaggttttgctaaagggggaaaatatggagggtcacttttgcca 18667307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 270 - 421
Target Start/End: Original strand, 16957169 - 16957322
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||||||        |||| |||    
T  16957169 cacaggtggcgtgccacatggggttgactgggtcaaaattgacgttttgcaaaagggggtaaacataggggatcacttttgccattttttttaatagggg 16957268  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  16957269 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcctaa 16957322  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 7314157 - 7314309
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaataggg 367  Q
    ||||||||||||||||  |||||||||||| ||||||||||| |||||| |||||||| || |||||| |||||||||||||||         ||  |||    
T  7314157 cacaggtggcatgccaagtatggttgactgggtcaaaattgaggttttgtaaaaggggataaacatggagggtcacttttgccattttttttaaaagggg 7314256  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  7314257 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgtgtttaagccta 7314309  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 42337219 - 42337066
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaataggg- 367  Q
    |||| ||||||||||||||||||||||||  |||||||||| | ||||||||||||||| | |||||||||||  |||||||||        |||||||     
T  42337219 cacatgtggcatgccacatatggttgactcggtcaaaattggcattttgcaaaagggggaaaacatggggggtagcttttgccattttttttaatagggt 42337120  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||| |||||||    
T  42337119 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctaa 42337066  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 275 - 418
Target Start/End: Original strand, 42338063 - 42338208
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaatagg-ggccaa 372  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||||| ||| | |||||||||||   ||||||||        |||||| ||||||    
T  42338063 gtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagagggaaaacatggggggttgtttttgccattttttttaataggaggccaa 42338162  T
Q  373 aattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||    
T  42338163 aattgcaacttttgcaaacttagggggcaaaaagtgagtttaagcc 42338208  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 420
Target Start/End: Complemental strand, 46469279 - 46469139
Alignment:
Q  281 tgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaaattgc 378  Q
    |||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||| |||        |||| ||||| ||||||||    
T  46469279 tgccacatatggttgacttagtcaaaattgacg-tatgcaaaagggggtagacatggggggtcatttttaccattttttttaatagggggctaaaattgc 46469181  T
Q  379 aacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    ||||| |||||||||| |||| | |||||| |||| ||||||    
T  46469180 aacttttgcaaacttaaggggtagaaagtgtgtttaagccta 46469139  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 17353009 - 17352888
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaataggg-gccaaaattgcaacttctgcaaacttagggg 398  Q
    |||||||||||  |||||||||||||||||| ||||| |||||||||||| |||       ||||||| ||||||||| |||||| ||||||||||||||    
T  17353009 agtcaaaattggagttttgcaaaagggggtaaacatgaggggtcacttttaccatttttttaatagggcgccaaaattacaacttttgcaaacttagggg 17352910  T
Q  399 gcaaaaagtgcgttttagccta 420  Q
      |||||||| |||| ||||||    
T  17352909 ataaaaagtgtgtttaagccta 17352888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 17353811 - 17353934
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaaattgcaacttctgcaaacttaggg 397  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||||||||||        |||| ||||||||||||| ||||| ||||||||||| |    
T  17353811 agtcaaaattggagttttgcaaaagggggtaaacatgaggggtcacttttgccattttttttaatagggggccaaaattgtaacttttgcaaacttagag 17353910  T
Q  398 ggcaaaaagtgcgttttagcctaa 421  Q
     | ||||||| ||||| |||||||    
T  17353911 agtaaaaagtacgtttaagcctaa 17353934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 37627612 - 37627558
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaag 324  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  37627612 cacaggtggtgtgccacatacggttgactgagtcaaaattgacgttttgcaaaag 37627558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 5450110 - 5450190
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||||||| |||| |||| |  ||||||||||||||    
T  5450110 caggtggcatgacacatatggttgactaggtcaaaattgaggttttgcaaaaggaggtaaacat-gaaggtcacttttgcca 5450190  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 35960142 - 35960261
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaaattgcaacttctgcaaacttaggg 397  Q
    |||||||||||||||||||||||||||| || ||||  ||||||||||||||||        |||| ||||| ||||||||||||| |||||| ||||||    
T  35960142 agtcaaaattgacgttttgcaaaaggggctaaacat--ggggtcacttttgccattttttttaatagggggctaaaattgcaacttttgcaaaattaggg 35960239  T
Q  398 ggcaaaaagtgcgttttagcct 419  Q
    || |||||||| |||| |||||    
T  35960240 ggtaaaaagtgggtttaagcct 35960261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 418
Target Start/End: Original strand, 12385419 - 12385545
Alignment:
Q  293 ttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggccaaaattgcaacttctgcaaac 391  Q
    |||||| |||||||||||   ||||| ||||||||||| ||||  ||||||||||||| ||        |||||||||||||||  |||||| || ||||    
T  12385419 ttgacttagtcaaaattggaattttgtaaaagggggtaaacattaggggtcacttttgtcattttttttaataggggccaaaatgtcaacttttgtaaac 12385518  T
Q  392 ttagggggcaaaaagtgcgttttagcc 418  Q
    |||||||| ||||||||||||| ||||    
T  12385519 ttagggggtaaaaagtgcgtttaagcc 12385545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 7313221 - 7313142
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttg 350  Q
    |||| |||||||||||  ||||||||||||  |||||||||| || |||||||| |||||| |||||| ||||||||||||    
T  7313221 cacatgtggcatgccaagtatggttgactggatcaaaattgatgtattgcaaaa-ggggtaaacatggagggtcacttttg 7313142  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 5441101 - 5441151
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaa 322  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||||    
T  5441101 caggtggcatgacacatatggttgactaggtcaaaattgaggttttgcaaa 5441151  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 16956950 - 16956995
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgg 61  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  16956950 caaaggagaggatgatgtaataagagaagatggagat-aaggtttgg 16956995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 40319604 - 40319550
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||||||| |||||| |||| ||| ||||||||||||| |||||    
T  40319604 ggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagcct 40319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 47508884 - 47508935
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  47508884 agtcaaaattgacgttttgcaaaaggggctagtcat--ggggtcacttttgcca 47508935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 35959135 - 35959078
Alignment:
Q  364 aggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||| ||||||||||||| | |||||||||||||||| ||||||| |||| |||||||    
T  35959135 agggaccaaaattgcaacctttgcaaacttagggggcgaaaagtgagtttaagcctaa 35959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 40659057 - 40659003
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||| ||||||||||||| || |||||||||||| ||||||| ||||| |||||    
T  40659057 ggggcaaaaattgcaacttttgtaaacttagggggtaaaaagtacgtttaagcct 40659003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 7313124 - 7313071
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    ||||||||||||||||||| |||||||||| |||| ||||| || |||| ||||    
T  7313124 ggggccaaaattgcaacttttgcaaacttaaggggtaaaaaatgagtttaagcc 7313071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 37628493 - 37628586
Alignment:
Q  302 tcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-ggggccaaaattgcaacttctgcaaacttaggg 397  Q
    |||||||||| |||||||||||| || || ||||   |||||||||||||||       |||| |||||||||||| |||||| |||||||||||||    
T  37628493 tcaaaattgatgttttgcaaaagaggctaaacat---gggtcacttttgccatttttttaatagggggccaaaattacaacttttgcaaacttaggg 37628586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 47507876 - 47507839
Alignment:
Q  302 tcaaaattgacgttttgcaaaagggggtagacatgggg 339  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  47507876 tcaaaattgaggttttgcaaaagggggtaaacatgggg 47507839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 16956882 - 16956918
Alignment:
Q  28 gatgaaataagagaagatggagatgaaggtttgggtc 64  Q
    |||||||||||| |||||| |||||||||||||||||    
T  16956882 gatgaaataagaaaagatgaagatgaaggtttgggtc 16956918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 274 - 419
Target Start/End: Original strand, 1532484 - 1532632
Alignment:
Q  274 ggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaata-ggggcc 370  Q
    |||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||| ||||||    
T  1532484 ggtggcgtgccacatacggttgactaagtcaaaattgacattttgcaaaagggggtagacatggggggtcacttttgccatttttttttaatatggggcc 1532583  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    ||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  1532584 aaaattgcaacttctgcaaacttagggggtaaaaagtgggtttaagcct 1532632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 270 - 420
Target Start/End: Complemental strand, 31376679 - 31376527
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaataggg 367  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||         ||  |||    
T  31376679 cacaggtggcatgacacatatggttgactgagtcaaaattgaggttttgcaaaagggggtaaacatgaggggtcacttttgccattttttttaaaagggg 31376580  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||||| ||||||||||| |||  |||||||||||| ||||||    
T  31376579 gccaaaattgcaacttttgcaaacttagagggtgaaaagtgcgtttaagccta 31376527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 273 - 418
Target Start/End: Original strand, 43916170 - 43916311
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaataggggccaa 372  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||       ||||||| ||||    
T  43916170 aggtggcatgccacatatgattgactgagtcaaaattgacgttttgcaaaaggggatagacat---gggtcacttttgcca-ttttttaatagggaccaa 43916265  T
Q  373 aattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcc 418  Q
    ||||||||| | |||||||||||||||| |||| ||||||| ||||    
T  43916266 aattgcaacatttgcaaacttagggggcgaaaaatgcgtttaagcc 43916311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 270 - 413
Target Start/End: Original strand, 30106972 - 30107114
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaatagggg- 368  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||  ||||||||||||||||       || |||||     
T  30106972 cacaggtggcatgccacatacggttgattgagtcaaaattgacgttttgtaaaaggggatagacat--ggggtcacttttgccatttttttaacagggga 30107069  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||    
T  30107070 ccaaaattgcaacatttgcaaacttagggggcgaaaagtgcgttt 30107114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 413
Target Start/End: Original strand, 29183364 - 29183508
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-gggg 368  Q
    |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||        |||| ||||    
T  29183364 cacaggtgacgtgccatatatggttgactgagtcaaaattgacgttttgcaaaagggggtatatatggggggtcacttttgccttttttttaataggggg 29183463  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    ||||||||||||||| | ||||||||| ||| |||||||| ||||    
T  29183464 ccaaaattgcaactttttcaaacttagagggtaaaaagtgtgttt 29183508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 276 - 422
Target Start/End: Complemental strand, 43915049 - 43914903
Alignment:
Q  276 tggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-ggggccaaaa 374  Q
    |||||||||||| |  ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||| ||||||||||    
T  43915049 tggcatgccacacaacgttgaccaagtcaaaattgacgttttgcaaaa-ggggtagacatggggggtcacttttgccatttttttaatagggggccaaaa 43914951  T
Q  375 ttgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaat 422  Q
    ||||||| | |||||||||||||||| |||||||||||| || |||||    
T  43914950 ttgcaacctttgcaaacttagggggcgaaaagtgcgtttaagtctaat 43914903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 24033061 - 24033144
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  24033061 cacaggtggcatgccacatatggttgactgggtcaaaattgaggttttgcaaaagggggtaaatatggggggtcacttttgcca 24033144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 16276874 - 16277024
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-gggg 368  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | |||| ||||||  |||||||||       |||| ||||    
T  16276874 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacat-gggggtagcttttgccatttttttaataggggg 16276972  T
Q  369 ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  16276973 ccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 16277024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 22776651 - 22776572
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcactttt 349  Q
    |||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  22776651 cacaggtggcgtgccacatacggttgactgagtcaagattgatgttttgcaaaagggggtagacatgaggggtcactttt 22776572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 30105554 - 30105504
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttg 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30105554 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttg 30105504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 16273883 - 16273814
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatgggggg 341  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | ||||||||||    
T  16273883 caggtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatgggggg 16273814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 5971205 - 5971083
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggcc-aaaattgcaacttctgcaaacttagggg 398  Q
    ||||||||||| |||||||| |||||| || ||| | |||||||||||||||         |||||||| | ||||||||||||| ||||||||||||||    
T  5971205 gtcaaaattgaggttttgcagaaggggctaaacaggaggggtcacttttgcctttttttttaatagggggctaaaattgcaacttttgcaaacttagggg 5971106  T
Q  399 gcaaaaagtgcgttttagcctaa 421  Q
    ||||||||||| |||||||||||    
T  5971105 gcaaaaagtgcattttagcctaa 5971083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 8051233 - 8051150
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||| |||||||||| |||||||||||||  |||||||| ||||||||| |||||  ||||||||||||||||  |||||||||    
T  8051233 cacatgtggcatgccgcatatggttgactcggtcaaaatcgacgttttgtaaaagaaggtagacatggggggtagcttttgcca 8051150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 5972180 - 5972253
Alignment:
Q  281 tgccacatatg-gttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||| || ||||  ||||||||||||||||    
T  5972180 tgccacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaacataaggggtcacttttgcca 5972253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 420
Target Start/End: Complemental strand, 24038051 - 24037901
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaataggg 367  Q
    |||| |||||||||||  |||||||||| | ||||||||||| |||||||||||| ||||| ||||  ||||||||||||||||         ||  |||    
T  24038051 cacatgtggcatgccaagtatggttgaccgggtcaaaattgatgttttgcaaaagagggtaaacat--ggggtcacttttgccattttttttaaaagggg 24037954  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    | |||||||||||||| |||||||||| |||  |||||||| |||| ||||||    
T  24037953 gtcaaaattgcaacttttgcaaacttaagggataaaaagtgagtttaagccta 24037901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 52143015 - 52142938
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttg 350  Q
    |||||||||||||  |||||||||||| ||||||||||  |||||||||||| ||||| |||| | ||||||||||||    
T  52143015 aggtggcatgccaagtatggttgactgggtcaaaattggggttttgcaaaagcgggtaaacatagagggtcacttttg 52142938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 408
Target Start/End: Original strand, 22778642 - 22778685
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtg 408  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  22778642 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtg 22778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 43601972 - 43602049
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttt 348  Q
    ||||||||||||| ||||||| ||||||||||| ||| || | ||||||||||| |||||| ||||||  |||||||||    
T  43601972 cacaggtggcatgacacatatagttgactgagttaaatttaaggttttgcaaaa-ggggtaaacatggtaggtcacttt 43602049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 1075906 - 1075959
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaa 323  Q
    |||| |||||||||| | ||||||||||||||||||||||||  ||||||||||    
T  1075906 cacatgtggcatgccgcgtatggttgactgagtcaaaattgagattttgcaaaa 1075959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 1075080 - 1075005
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttt 348  Q
    |||||||||||| || |||||||| ||| ||||||||||| |||||||||||  ||||| | |||| ||||||||||    
T  1075080 caggtggcatgctacgtatggttgtctgggtcaaaattgaggttttgcaaaa-tgggtaaaaatggagggtcacttt 1075005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 1531754 - 1531633
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aataggggc-caaaattgcaacttctgcaaacttagggg 398  Q
    ||||||||||  ||||||||||||||| || ||||||||||| |||||||  |        ||||||||  |||||||||||||| |||||||||||||     
T  1531754 gtcaaaattggtgttttgcaaaaggggctaaacatggggggtaacttttgtaattttttttaatagggggtcaaaattgcaacttttgcaaacttaggga 1531655  T
Q  399 gcaaaaagtgcgttttagccta 420  Q
    | |||||||| |||| ||||||    
T  1531654 gtaaaaagtgagtttaagccta 1531633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 16273778 - 16273728
Alignment:
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||||||||||||| |||||||||| |||| |||||||| |||| ||||||    
T  16273778 caaaattgcaacttttgcaaacttatggggtaaaaagtgagtttaagccta 16273728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 52144217 - 52144296
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgc 351  Q
    |||| |||||||||||  |||||||||| | ||||||||||| |||||| ||||| || || ||||  ||||||||||||||    
T  52144217 cacatgtggcatgccaagtatggttgaccgggtcaaaattgatgttttgtaaaagaggataaacat--ggggtcacttttgc 52144296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 26069041 - 26068898
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggg 367  Q
    |||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||||||        |||| |||    
T  26069041 cacaggtggcgtgccacatggggttgactgggtcaaaattgacgttttgcaaaagggggtaaacataggggatcacttttgccattttttttaatagggg 26068942  T
Q  368 gccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgt 411  Q
    |||||||||||||||| |||||||||| |||| |||||||||||    
T  26068941 gccaaaattgcaacttttgcaaacttaaggggtaaaaagtgcgt 26068898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 20126304 - 20126183
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg-ccaaaattgcaacttctgcaaacttagggg 398  Q
    ||||||||||| |||||||| |||||| || ||||| ||||||||||||||||        |||||||| ||||||||||||||| ||||||||||||||    
T  20126304 gtcaaaattgaggttttgcagaaggggctaaacatgaggggtcacttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggg 20126205  T
Q  399 gcaaaaagtgcgttttagccta 420  Q
    ||||||||||||||||||||||    
T  20126204 gcaaaaagtgcgttttagccta 20126183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 420
Target Start/End: Original strand, 27849294 - 27849443
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnnaata-ggggcc 370  Q
    ||||||||||||||||||| |||||||  |||||||| ||||||||||||||||||| | |||||||||||  |||||||||       |||| |||||     
T  27849294 caggtggcatgccacatatagttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggggggtagcttttgccatttttttaatagggggct 27849393  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    ||||||||||||| | |||||||||| || |||||||| |||| ||||||    
T  27849394 aaaattgcaacttttacaaacttaggaggtaaaaagtgagtttaagccta 27849443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 408
Target Start/End: Original strand, 33076168 - 33076302
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaa 372  Q
    |||||||||||||||||||||| |  |||||||| ||||||||||||||||||| | |||| ||||||  |||||||||        |||| ||||||||    
T  33076168 gtggcatgccacatatggttgattcggtcaaaatcgacgttttgcaaaagggggaaaacat-gggggtagcttttgccattttttttaatagggggccaa 33076266  T
Q  373 aattgcaacttctgcaaacttagggggcaaaaagtg 408  Q
    ||||||||||| ||||||||||||||| ||||||||    
T  33076267 aattgcaacttttgcaaacttagggggtaaaaagtg 33076302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 421
Target Start/End: Complemental strand, 3453482 - 3453332
Alignment:
Q  273 aggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcc-annnnnnnaata-ggggcc 370  Q
    |||||||||| |||||| | ||||||| ||||||||||| |||||||| |||||| || ||||  |||||||||||||||         |||| |||| |    
T  3453482 aggtggcatgacacataagattgactgggtcaaaattgaggttttgcagaaggggctaaacataaggggtcacttttgcctttttttttaatagggggtc 3453383  T
Q  371 aaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||| |||||| ||||||||||||||||||||| ||| |||||||||||    
T  3453382 aaaatttcaacttttgcaaacttagggggcaaaaattgcattttagcctaa 3453332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 270 - 421
Target Start/End: Complemental strand, 27848485 - 27848333
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg 368  Q
    |||| ||||||||||||| |||||||| |  |||||||| ||||||||||||||||||| | ||||||||  |  |||||||||        ||||||||    
T  27848485 cacatgtggcatgccacacatggttgattcggtcaaaatcgacgttttgcaaaagggggaaaacatgggga-tagcttttgccattttttttaatagggg 27848387  T
Q  369 -ccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
     ||||||||||||||| ||||||||||||||| |||||||| |||| |||||||    
T  27848386 gccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctaa 27848333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 33075334 - 33075264
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggg 340  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||| | |||||||||    
T  33075334 cacatgtggcatgccacatatggttgactcggtcaaaatcgacgttttgcaaaagggggaaaacatggggg 33075264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 3454384 - 3454504
Alignment:
Q  302 tcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn--aatagggg-ccaaaattgcaacttctgcaaacttagggg 398  Q
    |||||||||| |||||||| |||||| || ||||  ||||||||||||||||         |||||||| |||||||| |||||| ||||||||||||||    
T  3454384 tcaaaattgaggttttgcagaaggggctaaacataaggggtcacttttgccatttttttttaatagggggccaaaattacaacttttgcaaacttagggg 3454483  T
Q  399 gcaaaaagtgcgttttagcct 419  Q
    |||||| ||||||||||||||    
T  3454484 gcaaaaggtgcgttttagcct 3454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 419
Target Start/End: Original strand, 20127269 - 20127410
Alignment:
Q  281 tgccacatatg-gttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaaattg 377  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||| || ||||  ||||||||||||||||        |||| |||||||||||||    
T  20127269 tgccacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaacataaggggtcacttttgccattttttttaatagggggccaaaattg 20127368  T
Q  378 caacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||| | || ||||||| |||| ||||||||| ||| |||||    
T  20127369 caacctttgtaaacttaaggggtaaaaagtgcatttaagcct 20127410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 24607784 - 24607839
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  24607784 ggggccaaaattgcaacctttgcaaacttagggggcaaaaagtgtgttttagccta 24607839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 26069264 - 26069218
Alignment:
Q  15 caaaggagaggatgatgaaataagagaagatggagatgaaggtttgg 61  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  26069264 caaaggagaggatgatgtaataagagaagatggagatgaaggtttgg 26069218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 420
Target Start/End: Original strand, 42702034 - 42702176
Alignment:
Q  281 tgccacatatg-gttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaatagggg-ccaaaattg 377  Q
    ||||||||||| |||||  ||||||||||||| ||||||||||||||| || ||||  |||||| |||||||||        |||||||| |||||||||    
T  42702034 tgccacatatgcgttgatcgagtcaaaattgaggttttgcaaaaggggataaacataaggggtcgcttttgccattttttttaataggggaccaaaattg 42702133  T
Q  378 caacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
    |||| | || ||||||| |||| ||||||||||||| ||||||    
T  42702134 caacctttgtaaacttaaggggtaaaaagtgcgtttaagccta 42702176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 34387944 - 34388013
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatgggg 339  Q
    |||| |||||||||||  |||||||||||| |||||||| || |||||||||| ||||||| ||||||||    
T  34387944 cacatgtggcatgccaagtatggttgactgggtcaaaatggatgttttgcaaaggggggtaaacatgggg 34388013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 44702420 - 44702364
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaaggggg 328  Q
    ||||||||||||||| |||||||||||  |||||||| ||| |||||||||||||||    
T  44702420 caggtggcatgccacgtatggttgactcggtcaaaatcgacattttgcaaaaggggg 44702364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 30793996 - 30793939
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggg 327  Q
    ||||| ||||||| |||||| | |||||| |||||||||||| |||||||||||||||    
T  30793996 cacagttggcatgacacataggtttgactaagtcaaaattgatgttttgcaaaagggg 30793939  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 26069235 - 26069199
Alignment:
Q  78 atggagatgaaggtttggaagaggaagatggagattt 114  Q
    |||||||||||||||||||||||||||||| ||||||    
T  26069235 atggagatgaaggtttggaagaggaagatgaagattt 26069199  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 3627663 - 3627614
Alignment:
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||||||||||||| |||||||||| |||| |||||||| |||| |||||    
T  3627663 caaaattgcaacttttgcaaacttaaggggtaaaaagtgtgtttaagcct 3627614  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 34386998 - 34386937
Alignment:
Q  288 tatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcactttt 349  Q
    |||||||||||  ||||||||||  |||||||||||||||||| | |||| |||||| ||||    
T  34386998 tatggttgactaggtcaaaattggggttttgcaaaagggggtaaatatggagggtcattttt 34386937  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 3149226 - 3149274
Alignment:
Q  365 ggggccaaaattgcaacttctgcaaacttagggggcaaaaagtgcgttt 413  Q
    ||||||||||||||||| | |||||||||||| | | ||||||||||||    
T  3149226 ggggccaaaattgcaacctatgcaaacttaggagacgaaaagtgcgttt 3149274  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 3628023 - 3628099
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgc 351  Q
    |||||||| |||||  | |||||| ||| |||||||| |||||||||||||||| | | ||| ||||||| ||||||    
T  3628023 gtggcatgacacatgggcttgactaagttaaaattgaggttttgcaaaagggggcaaatatgaggggtcatttttgc 3628099  T

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Target: scaffold0446 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 420
Target Start/End: Complemental strand, 11709 - 11559
Alignment:
Q  272 caggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggc 369  Q
    ||||||||||||||||||||| |||||  |||||||| ||||||||| ||||||||| | |||||||||||  |||||||||        |||| |||||    
T  11709 caggtggcatgccacatatggctgactcggtcaaaatcgacgttttgaaaaagggggaaaacatggggggtagcttttgccattttttttaatagggggc 11610  T
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagccta 420  Q
     ||||||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  11609 taaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccta 11559  T

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Target: scaffold0203 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 9681 - 9559
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg-ccaaaattgcaacttctgcaaacttagggg 398  Q
    ||||||||||| |||||||| |||||| || ||||| ||| ||||||||||||        |||||||| ||||||||||||||| ||||||||||||||    
T  9681 gtcaaaattgaggttttgcagaaggggctaaacatgagggttcacttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggg 9582  T
Q  399 gcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||||||||||||    
T  9581 gcaaaaagtgcgttttagcctaa 9559  T

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Target: scaffold0203; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 15055 - 14933
Alignment:
Q  301 gtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgccannnnnnn-aatagggg-ccaaaattgcaacttctgcaaacttagggg 398  Q
    ||||||||||| |||||||| |||||| || ||||| ||| ||||||||||||        |||||||| ||||||||||||||| ||||||||||||||    
T  15055 gtcaaaattgaggttttgcagaaggggctaaacatgagggttcacttttgccattttttttaatagggggccaaaattgcaacttttgcaaacttagggg 14956  T
Q  399 gcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||||||||||||    
T  14955 gcaaaaagtgcgttttagcctaa 14933  T

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Target: scaffold0203; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 419
Target Start/End: Original strand, 16023 - 16164
Alignment:
Q  281 tgccacatatg-gttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca--nnnnnnnaataggggccaaaattg 377  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||| || ||||  || |||||||||||||         | | |||||||||||||    
T  16023 tgccacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaacataaggtgtcacttttgccattttttttaattgggggccaaaattg 16122  T
Q  378 caacttctgcaaacttagggggcaaaaagtgcgttttagcct 419  Q
    |||| | || ||||||| |||| ||||||||||||| |||||    
T  16123 caacctttgtaaacttaaggggtaaaaagtgcgtttaagcct 16164  T

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Target: scaffold1212 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 2258 - 2183
Alignment:
Q  270 cacaggtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcac 345  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  2258 cacaggtggcgtgccacatagggttcactgagtcaaaattgacgttttgcaaaagggggtagacataggggatcac 2183  T

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Target: scaffold1212; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 2183 - 2132
Alignment:
Q  370 caaaattgcaacttctgcaaacttagggggcaaaaagtgcgttttagcctaa 421  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  2183 caaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcctaa 2132  T

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Target: scaffold0827 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 418
Target Start/End: Original strand, 3225 - 3345
Alignment:
Q  300 agtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca-nnnnnnnaata-ggggccaaaattgcaacttctgcaaacttaggg 397  Q
    ||||||||||||| |||||||||||||| || |||||||| |||||||||||||        |||| |||| |||||||||||||| ||||||||||| |    
T  3225 agtcaaaattgacattttgcaaaaggggataaacatggggtgtcacttttgccattttctttaatagggggtcaaaattgcaacttttgcaaacttagcg 3324  T
Q  398 ggcaaaaagtgcgttttagcc 418  Q
     | ||||||||||||||||||    
T  3325 tgtaaaaagtgcgttttagcc 3345  T

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Target: scaffold0827; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 2504 - 2443
Alignment:
Q  275 gtggcatgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatg 336  Q
    ||||| || |||||| | |||||| |||||||||||| ||||||||||| |||||| |||||    
T  2504 gtggcgtgacacataagtttgactaagtcaaaattgaggttttgcaaaaaggggtaaacatg 2443  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 79972 - 79899
Alignment:
Q  279 catgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatggggggtcacttttgcca 353  Q
    |||| |||||| | |||||| |||||||||||| |||||| ||||||||||| | || ||| |||||||||||||    
T  79972 catgacacataggattgactcagtcaaaattgatgttttgtaaaagggggtaaatat-gggagtcacttttgcca 79899  T

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Target: scaffold0050; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 80926 - 80986
Alignment:
Q  279 catgccacatatggttgactgagtcaaaattgacgttttgcaaaagggggtagacatgggg 339  Q
    |||| |||||| | |||||  |||||||||||  |||||||||||||||||| ||||||||    
T  80926 catgacacataggattgaccaagtcaaaattggtgttttgcaaaagggggtaaacatgggg 80986  T

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