View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3988_low_3 (Length: 246)
Name: NF3988_low_3
Description: NF3988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3988_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 15545013 - 15545184
Alignment:
| Q |
16 |
atggtatgggatagggtggatttggggtcccaacctgtttgagttatcaatattcccgttgatgcctacatttgctctctttattcaagaaaaagaaggg |
115 |
Q |
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| T |
15545013 |
atggtatgggatagggtggatttggggtcccaacctgtttgagttatcaatattccatttgatgcctacatttgctctctttattcaggaaaaagaag-- |
15545110 |
T |
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| Q |
116 |
nnnnnnnnnnnnngtaaaagcatatttgaaatattaattgttattttcagatcaaaatattgattgtgcatgtaactttact |
197 |
Q |
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|||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15545111 |
-----aaaaaaaagtaaaagcgtatttgaaatat---ttgttattttcatatcaaaatattgattgtgcatgtaactttact |
15545184 |
T |
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