View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3988_low_4 (Length: 240)
Name: NF3988_low_4
Description: NF3988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3988_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36804930 - 36805157
Alignment:
| Q |
1 |
caaaaccaaaaccttacgattgattgtaaaactaaaacatcacaatttctaataattttattctatttttaaattgattctaattgcaagctcttgcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36804930 |
caaaaccaaaaccttacgattgattgtaaaactaaaacatcacaatttctaataattttattctatttttaaattgattctaattgcaagctcttgcttt |
36805029 |
T |
|
| Q |
101 |
gatatgttgaaacatggccttgaacgatgcctctcctacc-ttcnnnnnnnggttagaaactcaatatccaatttaaggatcaactaatctgaaggttta |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36805030 |
gatatgttgaaacatggccttgaatgatgcctctcctaccttttttttttttgttagaaactcaatatccaatttaaggatcaactaatctgaaggttta |
36805129 |
T |
|
| Q |
200 |
attaaagtcaaagcaagactttatatat |
227 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
36805130 |
attaaagccaaagcaagactttatatat |
36805157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University