View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3988_low_5 (Length: 234)
Name: NF3988_low_5
Description: NF3988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3988_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 22756642 - 22756424
Alignment:
| Q |
1 |
tactggcttcacaattgaaagatgaatgattaagctttatgagagacaatataaacagcttttgaaatcatgtctgttatgaaagctgctgcaaacgtta |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756642 |
tactggtttcacaattgaatgatgaatgattaagctttatgagagacaatataagctgcttttgaaatcatgtctgttatgaaagctgctgcaaacgtta |
22756543 |
T |
|
| Q |
101 |
cagaacctttcagacagaaacacactctctctcttttgtaaggaaacggcgtttgttggaatctgtgaatcacaatacataacagcttctttggtttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756542 |
cagaacctttcagacagaaacacactctctctcttttgtaaggaaacggcgtttgttggaatctgtgaatcacaatacataacagcttctttggtttgtg |
22756443 |
T |
|
| Q |
201 |
tccattttataatacaaaa |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22756442 |
tccattttataatacaaaa |
22756424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University