View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3989_low_11 (Length: 214)
Name: NF3989_low_11
Description: NF3989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3989_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 52947672 - 52947557
Alignment:
| Q |
1 |
ttacaccatgactctttagcttctctgaaaccctatttcacaaggacgaaatgcaaaaatgaaaaca--ttttttcaataaataggggggaaatcaaaag |
98 |
Q |
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| T |
52947672 |
ttacaccatgactctctaacttctctgaaaccctatttcacaaggacgaaatg-gaaaatgagagcattttttttcaataaataggggggaaatcaaaag |
52947574 |
T |
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| Q |
99 |
acatgatgactcaccaa |
115 |
Q |
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||| ||||||||||||| |
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| T |
52947573 |
acaggatgactcaccaa |
52947557 |
T |
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