View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3989_low_2 (Length: 397)
Name: NF3989_low_2
Description: NF3989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3989_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 5469263 - 5468881
Alignment:
| Q |
19 |
gagtgaaggggtggattcagacataatattttgcagctgttaaattatgaaagaaacttcaagtaaattatactnnnnnnnntaagaaataatattgttt |
118 |
Q |
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| T |
5469263 |
gagtgaaggggtggattcagacataatattttgcagctgttaaattatgaaagaaactttaagtaaattatactaaaaaaa-taagaaataacattgttt |
5469165 |
T |
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| Q |
119 |
ctctcatgaaagcataggaaaatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaat |
218 |
Q |
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| T |
5469164 |
ctctcaagaaagcataggaaaatatttctttatactataaagcaaaacaatgactttgtaagcacaataac---taaagcattctgagaaaaatcaaaat |
5469068 |
T |
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| Q |
219 |
tcaaaatcagaattggagattcaacaaagaaaatcatcagag--------------ttgggatacatactaatgatgcgacatttatacatcaaacatta |
304 |
Q |
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| T |
5469067 |
tcaaaatcagaattggagattcaacaaagaaaatcatcagagttggatattcagaattgggatacatactaatgatgcgacatttatacatcaaacatta |
5468968 |
T |
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| Q |
305 |
tatcttaattagaggtaaatgcttatatttttcacttatttgtctttgtagtcgattcttacatgccagaacgcgcgcgggcgtacacacact |
397 |
Q |
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| T |
5468967 |
tatc----ttagagataaatgcttatatttttcacttatttgtctttgtagtcgattctcacatgccagaacgcgcgc--gcgtacacacact |
5468881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 14319158 - 14319237
Alignment:
| Q |
139 |
aatatttatttatactataaagcaaaacaatgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaatt |
219 |
Q |
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| T |
14319158 |
aatatttcttcatcctataaattagaacaatgactttgtaagcacaataactaat-aagcattctcaggaaaatcaaaatt |
14319237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 9590394 - 9590476
Alignment:
| Q |
168 |
atgactttgtaagcacaataactaataaagcattctgagaaaaatcaaaattcaaaatcagaattggagattcaacaaagaaaa |
251 |
Q |
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| T |
9590394 |
atgactttgaaagcaaaatgactaatacat-attctaaaaaaaatccaaattcagaatcagaattggggattcaacaaagaaaa |
9590476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 9590532 - 9590578
Alignment:
| Q |
291 |
tacatcaaacattatatcttaattagaggtaaatgcttatatttttcactt |
341 |
Q |
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| T |
9590532 |
tacatcaaacattatagctta----gaggtaaatgcttatatttttcactt |
9590578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 38572135 - 38572176
Alignment:
| Q |
154 |
tataaagcaaaacaatgactttgtaagcacaataactaataa |
195 |
Q |
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| T |
38572135 |
tataaagcaaaacagtgactttgtaagtacaataactaataa |
38572176 |
T |
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