View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3989_low_3 (Length: 346)

Name: NF3989_low_3
Description: NF3989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3989_low_3
NF3989_low_3
[»] chr3 (8 HSPs)
chr3 (1-338)||(32416978-32417303)
chr3 (159-250)||(1613912-1614001)
chr3 (154-258)||(29359213-29359314)
chr3 (165-234)||(4525197-4525265)
chr3 (155-258)||(45953912-45954013)
chr3 (155-203)||(11194786-11194834)
chr3 (154-234)||(34785090-34785169)
chr3 (160-200)||(45954105-45954145)
[»] chr1 (8 HSPs)
chr1 (154-257)||(46510624-46510726)
chr1 (161-234)||(23175834-23175906)
chr1 (154-263)||(28215941-28216045)
chr1 (155-257)||(15608861-15608961)
chr1 (165-259)||(43741118-43741210)
chr1 (154-234)||(28750073-28750152)
chr1 (154-253)||(31730522-31730619)
chr1 (165-259)||(2730384-2730476)
[»] chr8 (13 HSPs)
chr8 (154-258)||(28237285-28237387)
chr8 (159-237)||(33744393-33744470)
chr8 (161-257)||(35065511-35065605)
chr8 (154-236)||(10167689-10167770)
chr8 (154-236)||(10675544-10675625)
chr8 (165-203)||(33970650-33970688)
chr8 (154-263)||(17075310-17075417)
chr8 (154-263)||(17572853-17572960)
chr8 (155-232)||(32222677-32222753)
chr8 (159-258)||(290552-290647)
chr8 (155-263)||(4718164-4718270)
chr8 (161-259)||(10579027-10579123)
chr8 (160-200)||(33744259-33744299)
[»] chr6 (15 HSPs)
chr6 (154-258)||(31842455-31842557)
chr6 (154-255)||(4058859-4058958)
chr6 (160-234)||(10117895-10117968)
chr6 (155-255)||(7466452-7466551)
chr6 (155-262)||(29681594-29681699)
chr6 (154-200)||(6153799-6153845)
chr6 (154-256)||(6366625-6366725)
chr6 (154-236)||(9242396-9242477)
chr6 (160-258)||(34556551-34556646)
chr6 (160-197)||(13685536-13685573)
chr6 (155-200)||(32132033-32132078)
chr6 (160-236)||(5385471-5385546)
chr6 (160-200)||(7466384-7466424)
chr6 (161-257)||(15837589-15837684)
chr6 (155-203)||(32462170-32462218)
[»] chr4 (12 HSPs)
chr4 (160-260)||(26629429-26629527)
chr4 (155-257)||(33181509-33181609)
chr4 (155-256)||(33230382-33230481)
chr4 (155-260)||(2717296-2717399)
chr4 (155-263)||(8459529-8459635)
chr4 (154-258)||(48148762-48148864)
chr4 (161-257)||(54682920-54683014)
chr4 (154-236)||(23256976-23257057)
chr4 (154-236)||(27704688-27704769)
chr4 (165-255)||(37133412-37133500)
chr4 (160-200)||(32319550-32319590)
chr4 (161-257)||(44258698-44258792)
[»] chr7 (10 HSPs)
chr7 (155-254)||(43359523-43359620)
chr7 (154-255)||(40934443-40934542)
chr7 (155-259)||(40081845-40081947)
chr7 (154-203)||(8238685-8238734)
chr7 (160-257)||(41506505-41506600)
chr7 (160-258)||(29368836-29368931)
chr7 (160-257)||(25513550-25513645)
chr7 (154-263)||(37220349-37220456)
chr7 (154-195)||(38444464-38444505)
chr7 (154-203)||(47764610-47764659)
[»] chr5 (5 HSPs)
chr5 (165-234)||(3308611-3308679)
chr5 (155-257)||(34578300-34578399)
chr5 (154-254)||(10737796-10737894)
chr5 (155-203)||(28770625-28770673)
chr5 (160-200)||(36486767-36486807)
[»] scaffold0223 (1 HSPs)
scaffold0223 (160-236)||(28126-28201)
[»] chr2 (9 HSPs)
chr2 (155-259)||(38556245-38556347)
chr2 (154-236)||(11723571-11723653)
chr2 (161-200)||(39134521-39134560)
chr2 (160-258)||(6334105-6334201)
chr2 (187-257)||(43927758-43927826)
chr2 (165-270)||(12262721-12262824)
chr2 (160-200)||(8846919-8846959)
chr2 (161-197)||(16101278-16101314)
chr2 (154-254)||(25903573-25903671)
[»] scaffold0045 (1 HSPs)
scaffold0045 (160-200)||(22162-22202)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 32416978 - 32417303
Alignment:
Q  1 atttcttaaaatagggtatgcttgaaagttcccttaaatcaaacaaactaaagacttgtttgtatttatttatttgagtgtatcgatctacttaacatgg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32416978 atttcttaaaatagggtatgcttgaaagtttccttaaatcaaacaaactaaagacttgtttgtatttatttatttgagtgtatcgatctacttaacatgg 32417077  T
Q  101 tgcgatttataattaataatgctgatgaannnnnnnnatagggactnnnnnnnttgattgaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||||||||||||||||||||||||||        |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  32417078 tgcgatttataattaataatgctgatgaattttttttatagggactaaaaaaattgattgaaaattttacagggactaaaatgtgcgattttattttata 32417177  T
Q  201 agggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctataattgatttatatagaataattacctcatgcataaacactt 300  Q
    ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  32417178 agggaatcaaaatgaaattctaaatatttatagggatcat-ttacttaattaaccctataattgattta-----------tacctcatgcataaacactt 32417265  T
Q  301 atatataagcatttatactataagcacttacctatgct 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32417266 atatataagcatttatactataagcacttacctatgct 32417303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 1613912 - 1614001
Alignment:
Q  159 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaat 250  Q
    ||||||||||||||| ||||||| |||||||||||||||  |||||| | ||||| ||||||||| ||||||||||||| || |||||||||    
T  1613912 tgaaaattttacaggtactaaaaagtgcgattttatttt-gaagggactaaaaataaaattctaaatatttatagggatcat-ttacttaat 1614001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 29359213 - 29359314
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||  || ||||| ||||||| | |||||||||||   || ||||||||||||    
T  29359213 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg--attaaaataaaattctgaatatttatagggtccat-ttacttaattaa 29359309  T
Q  254 cccta 258  Q
    |||||    
T  29359310 cccta 29359314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 4525197 - 4525265
Alignment:
Q  165 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 234  Q
    ||||||| ||||||||| ||||||||||||||| ||| ||| | ||||||||||||||  ||||||||||    
T  4525197 ttttacaaggactaaaaagtgcgattttattttgtaa-ggactaaaaatgaaattctagatatttatagg 4525265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 45954013 - 45953912
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| | ||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | |||||| |||||  || |||||||||||||    
T  45954013 tgatggaaaattttataaggactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaatatttacagggaccat-ttacttaattaac 45953916  T
Q  255 ccta 258  Q
    ||||    
T  45953915 ccta 45953912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 11194786 - 11194834
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 203  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  11194786 tgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 11194834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 34785090 - 34785169
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 234  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||    
T  34785090 ttgatggaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagg 34785169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 45954105 - 45954145
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  45954105 gaaaatttcacagggactaaaaagtgtgattttattttata 45954145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 46510624 - 46510726
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||||||||||||||| |||||||||||||||   ||||| | ||||  ||||||| | ||||||||||||  || ||||||||||||    
T  46510624 ttgatggaaaattttacagggactaaaaagtgcgattttatttttgtagggactaaaaacaaaattctgaatatttatagggaccat-ttacttaattaa 46510722  T
Q  254 ccct 257  Q
    ||||    
T  46510723 ccct 46510726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 23175834 - 23175906
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 234  Q
    ||||||||||||||||||||| || |||||||||||||| ||||| | ||||| ||||||||| |||| |||||    
T  23175834 aaaattttacagggactaaaaagtacgattttattttat-agggactaaaaataaaattctaaatattaatagg 23175906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 28215941 - 28216045
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| || |||||||| ||| || |||||||| || |||| | ||||   |||||||| ||||||||||||| || ||||||||||||    
T  28215941 ttgatggaaaattttatagagactaaaaagtgtgactttattttgta-gggactaaaaa---aattctaaatatttatagggattat-ttacttaattaa 28216035  T
Q  254 ccctataatt 263  Q
    ||||||||||    
T  28216036 ccctataatt 28216045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 15608861 - 15608961
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | |||||| |||||  || |||||||||||||    
T  15608861 tgatagaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttacagggaccat-ttacttaattaac 15608958  T
Q  255 cct 257  Q
    |||    
T  15608959 cct 15608961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 43741210 - 43741118
Alignment:
Q  165 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 259  Q
    ||||||||||||||||| ||| |||||||||||||||   ||| ||||| ||||||| | |||||||| |||  || ||||||||||||||||||    
T  43741210 ttttacagggactaaaaagtgtgattttattttataa-ataataaaaataaaattctgaatatttataaggaccat-ttacttaattaaccctat 43741118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 28750152 - 28750073
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 234  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| ||| ||| | ||||  ||||||| ||||||||||||    
T  28750152 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaa-ggattaaaaacaaaattctgattatttatagg 28750073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 31730619 - 31730522
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||    
T  31730619 ttgatggaaaattttatagggactaaaaattgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaa 31730522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 2730384 - 2730476
Alignment:
Q  165 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 259  Q
    ||||| ||| ||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | |||||||| |||| || ||||||||||||||||||    
T  2730384 ttttataggaactaaaaagtgtgattttattttgtaa-ggattaaaaataaaattctgaatatttataaggatgat-ttacttaattaaccctat 2730476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 28237387 - 28237285
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||    
T  28237387 ttgatggaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaa 28237290  T
Q  254 cccta 258  Q
    |||||    
T  28237289 cccta 28237285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 33744393 - 33744470
Alignment:
Q  159 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggat 237  Q
    ||||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | |||||||||||||    
T  33744393 tgaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggat 33744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 35065605 - 35065511
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 257  Q
    ||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||  || ||||||||||||||||    
T  35065605 aaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggactat-ttacttaattaaccct 35065511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 10167689 - 10167770
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 236  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  10167689 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 10167770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 10675544 - 10675625
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 236  Q
    ||||| |||||||||| ||| ||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | ||||||||||||    
T  10675544 ttgatggaaaattttataggaactaaaaagtgtgattttattttgtaa-ggactaaaaataaaattctgaatatttataggga 10675625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 33970688 - 33970650
Alignment:
Q  165 ttttacagggactaaaatgtgcgattttattttataagg 203  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  33970688 ttttacaaggactaaaaagtgcgattttattttataagg 33970650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 17075417 - 17075310
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| ||||||||||||  || ||||| ||| ||||||||||| | ||||| | ||||| ||||| | | ||||||||| ||| || ||||||||||||    
T  17075417 ttgatagaaaattttacaaagaataaaaggtgtgattttattttgt-agggactaaaaataaaattttgaatatttatagagatcat-ttacttaattaa 17075320  T
Q  254 ccctataatt 263  Q
    |||| |||||    
T  17075319 ccctttaatt 17075310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 17572853 - 17572960
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| ||||||||||||  || ||||| ||| ||||||||||| | ||||| | ||||| ||||| | | ||||||||| ||| || ||||||||||||    
T  17572853 ttgatagaaaattttacaaagaataaaaggtgtgattttattttgt-agggactaaaaataaaattttgaatatttatagagatcat-ttacttaattaa 17572950  T
Q  254 ccctataatt 263  Q
    |||| |||||    
T  17572951 ccctttaatt 17572960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 32222753 - 32222677
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttata 232  Q
    |||| |||||||||||| |||||||||  |||||||||||||||  || |||| |||| |||||||| | ||||||||    
T  32222753 tgatggaaaattttacaaggactaaaaaatgcgattttatttta-cagagaataaaaacgaaattctgaatatttata 32222677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 290552 - 290647
Alignment:
Q  159 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 258  Q
    |||||| |||| ||||||||||| ||| ||||||||||||| |||||  |||||  ||||| | | ||||||||||||  || |||||||||||||||||    
T  290552 tgaaaaatttatagggactaaaaagtgtgattttattttat-aggga--caaaaaaaaattatgaatatttatagggaccat-ttacttaattaacccta 290647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 4718164 - 4718270
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| ||| ||||||| ||| ||||||||||| | ||||| | ||||  ||||| | | ||||||||||||  || |||||||||||||    
T  4718164 tgatggaaaattttataggaactaaaaagtgtgattttattttgt-agggactaaaaacaaaattatgaatatttatagggaccat-ttacttaattaac 4718261  T
Q  255 cctataatt 263  Q
    |||| ||||    
T  4718262 cctaaaatt 4718270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 10579123 - 10579027
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga-taatattacttaattaaccctat 259  Q
    ||||||||| ||||| ||||| ||| ||||||||||| | ||||| | ||||  ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  10579123 aaaattttatagggattaaaaagtgtgattttattttgt-agggactaaaaacaaaattctaaatatttatagggactaaaa--acttaattaaccctat 10579027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 33744299 - 33744259
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  33744299 gaaaatgtcacagggactaaaatgtgtgattttattttata 33744259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 31842557 - 31842455
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||| | ||||| | ||||  ||||||||| |||||||| ||| ||| |||||| |||||    
T  31842557 ttgatagaaaattttatagggactaaaaagtgcgattttattttgt-agggactaaaaacaaaattctaaatatttataaggacaat-ttactttattaa 31842460  T
Q  254 cccta 258  Q
    |||||    
T  31842459 cccta 31842455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 4058958 - 4058859
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||||| ||||||||| ||  || ||||||||||||    
T  4058958 ttgatggaaaattttaaagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctaaatatttatagagaccat-ttacttaattaa 4058861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 10117968 - 10117895
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 234  Q
    |||||||||||| ||||||||| ||||||||||||||||||  ||  | ||||||||||| ||| ||||||||||    
T  10117968 gaaaattttacaaggactaaaaagtgcgattttattttatagaggt-taaaaatgaaattttaaatatttatagg 10117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 7466452 - 7466551
Alignment:
Q  155 tgattgaaaatttt-acagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    |||||||||||||| | ||||||||||| ||| ||||||||||||||| ||| | ||||  ||||||||| |||||||| |||  || ||||||||||||    
T  7466452 tgattgaaaatttttatagggactaaaaagtgtgattttattttataa-ggactaaaaacaaaattctaaatatttataaggaccat-ttacttaattaa 7466549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 29681699 - 29681594
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| | ||||||||| |||  |||||||||||| ||||| | ||||  ||||||| | |||||| |||||  || |||||||||||||    
T  29681699 tgatggaaaattttataaggactaaaaagtgtaattttattttat-agggactaaaaacaaaattctgaatatttacagggaccat-ttacttaattaac 29681602  T
Q  255 cctataat 262  Q
    ||||||||    
T  29681601 cctataat 29681594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 6153845 - 6153799
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    ||||| |||||||||| | ||||||||| ||||||||||||||||||    
T  6153845 ttgatggaaaattttataaggactaaaaagtgcgattttattttata 6153799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 6366625 - 6366725
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||| ||||| || |||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | ||||||||||||  || ||||||||||||    
T  6366625 ttgatggaaatttttatagagactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggaccat-ttacttaattaa 6366722  T
Q  254 ccc 256  Q
    |||    
T  6366723 ccc 6366725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 9242477 - 9242396
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 236  Q
    ||||| |||||| ||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  9242477 ttgatggaaaatgttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctaaatatttataggga 9242396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 34556551 - 34556646
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 258  Q
    |||||| | ||||||||||||| ||| ||||||||||| || |||| | ||||| ||||||| | ||||||||||||  || |||||||||||||||||    
T  34556551 gaaaatgtcacagggactaaaa-gtgtgattttattttgta-gggactaaaaataaaattcttaatatttatagggaccat-ttacttaattaacccta 34556646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 13685573 - 13685536
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttatttt 197  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  13685573 gaaaattttacagggactaaaaagtgtgattttatttt 13685536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 32132078 - 32132033
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||||    
T  32132078 tgatggaaaattttacagagactaaatagtgcgattttattttata 32132033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 5385471 - 5385546
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 236  Q
    |||||||||| | ||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | ||||||||||||    
T  5385471 gaaaattttataaggactaaaaagtgtgattttattttat-agggattaaaaacaaaattctgaatatttataggga 5385546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 7466424 - 7466384
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  7466424 gaaaatgttacagggactaaaaagtgtgattttattttata 7466384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 257
Target Start/End: Original strand, 15837589 - 15837684
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 257  Q
    ||||||||| ||||||||||| ||| |||||||||||   ||||| | ||||  | ||||||| |||||||||||| |   ||||||||||||||||    
T  15837589 aaaattttatagggactaaaaagtgtgattttatttttctagggactaaaaacaacattctaaatatttataggga-aggtttacttaattaaccct 15837684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 32462218 - 32462170
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 203  Q
    |||| ||| |||||| ||||||||||||||| ||||||||||| |||||    
T  32462218 tgatggaacattttatagggactaaaatgtgtgattttattttgtaagg 32462170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 26629527 - 26629429
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 259  Q
    |||||||| ||||||||||||| ||| ||||||||||| | ||||| | ||||||||||| | | ||||||||||||  || ||||||||||||||||||    
T  26629527 gaaaatttcacagggactaaaaagtgtgattttattttgt-agggactaaaaatgaaattttgaatatttatagggaccat-ttacttaattaaccctat 26629430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 33181609 - 33181509
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | || |||||||||| | ||||||||||||| || |||||||||| ||    
T  33181609 tgatggaaaattttatagggactaaaaagtgtgattttatttt-ttagggattaaatatgaaattctgaatatttatagggatcat-ttacttaattgac 33181512  T
Q  255 cct 257  Q
    |||    
T  33181511 cct 33181509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 33230382 - 33230481
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | || |||||||||| | ||||||||||||| || |||||||||| ||    
T  33230382 tgatggaaaattttatagggactaaaaagtgtgattttatttt-ttagggattaaatatgaaattctgaatatttatagggatcat-ttacttaattgac 33230479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 2717296 - 2717399
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| | ||||||||| || |||| |||||||||| || | | ||||||||||| ||| ||||||||||||  || |||||||||||||    
T  2717296 tgatggaaaattttataaggactaaaaagtacgatattattttata-ggaattaaaaatgaaattataaatatttatagggactat-ttacttaattaac 2717393  T
Q  255 cctata 260  Q
    | ||||    
T  2717394 catata 2717399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 8459529 - 8459635
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||| ||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||  || |||||||||||||    
T  8459529 tgatggaaaatcttatagggactaaaaagtgtgattttattttgt-agggattaaaaacaaaattctgaatatttatagggaccat-ttacttaattaac 8459626  T
Q  255 cctataatt 263  Q
    |||| ||||    
T  8459627 cctaaaatt 8459635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 48148864 - 48148762
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||  ||||| | | |||||||||||| ||| ||||||||||||    
T  48148864 ttgatggaaaattttatagggactaaaaactgtgattttattttgt-agggactaaaaacaaaattatgaatatttatagggacaat-ttacttaattaa 48148767  T
Q  254 cccta 258  Q
    |||||    
T  48148766 cccta 48148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 54683014 - 54682920
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 257  Q
    ||||||||| ||||||||||| |||  ||||||||||||  |||| | ||||  ||||||| | |||||||||||| ||| ||||||||||||||||    
T  54683014 aaaattttatagggactaaaaagtgtaattttattttat-tgggactaaaaactaaattctgaatatttatagggacaat-ttacttaattaaccct 54682920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 23257057 - 23256976
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 236  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  23257057 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 23256976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 27704688 - 27704769
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 236  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  27704688 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 27704769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 37133412 - 37133500
Alignment:
Q  165 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacc 255  Q
    ||||| || |||||||| ||| ||||||||||| || |||||| ||||  ||||||||| ||||||||||||  || ||||||||||||||    
T  37133412 ttttatagagactaaaaagtgtgattttattttgta-gggaataaaaacaaaattctaaatatttatagggaccat-ttacttaattaacc 37133500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 32319590 - 32319550
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||||||| ||||||||||| ||| ||||||||||||||    
T  32319590 gaaaattttatagggactaaaaagtgtgattttattttata 32319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 44258792 - 44258698
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 257  Q
    ||||||||| ||| ||| ||| ||| ||||||||||| || |||| | ||||  ||||||||| ||||||||||||  || ||||||||||||||||    
T  44258792 aaaattttataggcacttaaaagtgtgattttattttgta-gggattaaaaacaaaattctaaatatttatagggaccat-ttacttaattaaccct 44258698  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 43359620 - 43359523
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| ||||||| |||| | ||||||||||||||||||||||| ||| ||| | ||||||||||||||| ||||||||| ||  || |||||||||||||    
T  43359620 tgatggaaaattatacatgaactaaaatgtgcgattttattttgtaa-ggactgaaaatgaaattctaaatatttatagcgaccat-ttacttaattaac 43359523  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 40934542 - 40934443
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||||| ||||| | ||||| ||||||| | |||||| |||||  || ||||||||||||    
T  40934542 ttgatggaaaattttatagggactaaaaagtgtgattttattttat-agggactaaaaataaaattctgaatatttacagggaccat-ttacttaattaa 40934445  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 40081845 - 40081947
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||| ||||||| | ||||||||||||  || |||||||||||||    
T  40081845 tgatggaaaattttatagggactaaaaaatgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggaccat-ttacttaattaac 40081942  T
Q  255 cctat 259  Q
    |||||    
T  40081943 cctat 40081947  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 8238734 - 8238685
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagg 203  Q
    ||||| |||||||||| ||||||||||| ||| |||||||||||||||||    
T  8238734 ttgatggaaaattttatagggactaaaaagtgtgattttattttataagg 8238685  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 41506505 - 41506600
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 257  Q
    ||||||||||  | |||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||||||    
T  41506505 gaaaattttattgagactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaaccct 41506600  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 29368931 - 29368836
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 258  Q
    |||||||||| || |||||||| |||||||||||||||   ||||| | ||||  ||||| | | |||||||||||| ||| |||||||||||||||||    
T  29368931 gaaaattttatagagactaaaaggtgcgattttattttg--agggactaaaaacaaaattttgaatatttatagggacaat-ttacttaattaacccta 29368836  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 25513550 - 25513645
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 257  Q
    |||||| | ||||||||||||| ||| |||||||||||||  |||| | ||||  ||||||| | ||||||||||||  || ||||||||||||||||    
T  25513550 gaaaatgtcacagggactaaaaagtgtgattttattttat-ggggactaaaaacaaaattctgaatatttatagggaccat-ttacttaattaaccct 25513645  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 37220349 - 37220456
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| ||||||||||| ||| |||||| |||| | ||||| | ||||  ||||||  | ||||||||||||| | |  ||||||||||    
T  37220349 ttgatggaaaattttatagggactaaaaagtgtgattttcttttgt-agggattaaaaacaaaattcggaatatttatagggatta-aaaacttaattaa 37220446  T
Q  254 ccctataatt 263  Q
    ||||||||||    
T  37220447 ccctataatt 37220456  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 38444505 - 38444464
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttatt 195  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  38444505 ttgatggaaaattttacagggactaaaaagtgtgattttatt 38444464  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 47764610 - 47764659
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagg 203  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  47764610 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 47764659  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 3308611 - 3308679
Alignment:
Q  165 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 234  Q
    ||||||| ||||||||||||||||||||||||| ||| ||| | ||||||||||||| | ||||||||||    
T  3308611 ttttacatggactaaaatgtgcgattttattttctaa-ggactaaaaatgaaattctgaatatttatagg 3308679  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 34578399 - 34578300
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||||||  || || ||||  ||||||| | |||||||||| |  || |||||||||||||    
T  34578399 tgatggaaaattttatagggactaaaaagtgtgattttattttata--gggattaaaaaaaaattctgaatatttataggaaccat-ttacttaattaac 34578303  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 10737796 - 10737894
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||  |||||||||||  || ||||||||||||| ||| ||| ||||  |||||||||  |||||||||||  || ||||||||||||    
T  10737796 ttgatggaaaattttgtagggactaaaaaatgtgattttattttat-aggaaataaaaacaaaattctaaaaatttatagggaccat-ttacttaattaa 10737893  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 28770673 - 28770625
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 203  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  28770673 tgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 28770625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 36486767 - 36486807
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  36486767 gaaaatttcacagggactaaaaagtgtgattttattttata 36486807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 28201 - 28126
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 236  Q
    |||||||||||||||||||||| |||| |||||||||| | ||||| | ||||| ||||| ||| ||||||||||||    
T  28201 gaaaattttacagggactaaaaagtgcaattttattttgt-agggactaaaaataaaattttaaatatttataggga 28126  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 38556245 - 38556347
Alignment:
Q  155 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 254  Q
    |||| |||||||||| ||||||||||| || |||||||||||| | ||||| | |||   ||||||| | |||||||||||| ||| |||||||||||||    
T  38556245 tgatggaaaattttatagggactaaaaagtacgattttattttgt-agggactaaaatcaaaattctgaatatttatagggacaat-ttacttaattaac 38556342  T
Q  255 cctat 259  Q
    |||||    
T  38556343 cctat 38556347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 11723571 - 11723653
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattct-aattatttataggga 236  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| || ||||||||||||    
T  11723571 ttgatggaaaattttacagggactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaaatatttataggga 11723653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 39134560 - 39134521
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttattttata 200  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  39134560 aaaattttatagggactaaaatgtgtgattttattttata 39134521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 6334201 - 6334105
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 258  Q
    |||||| ||| ||||||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | |||||||| |||  || |||||||||||||||||    
T  6334201 gaaaatcttatagggactaaaaagtgtgattttattttgtaa-ggactaaaaataaaattctgaatatttataaggaccat-ttacttaattaacccta 6334105  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 43927758 - 43927826
Alignment:
Q  187 gattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 257  Q
    |||||||||||||| |||| | ||||| ||||||| | ||||||||||||| || ||||||||||||||||    
T  43927758 gattttattttata-gggactaaaaataaaattctgaatatttatagggatcat-ttacttaattaaccct 43927826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 12262824 - 12262721
Alignment:
Q  165 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctataattg 264  Q
    ||||| ||||||||||| |||  |||||||||| || |||| | ||||  ||||||||| ||||||||||||  || ||||||||||||||||  ||||     
T  12262824 ttttatagggactaaaaagtgttattttattttgta-gggattaaaaacaaaattctaaatatttatagggaccat-ttacttaattaacccttaaatta 12262727  T
Q  265 atttat 270  Q
    ||||||    
T  12262726 atttat 12262721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 8846919 - 8846959
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  8846919 gaaaatgttacagggactaaaaagtgtgattttattttata 8846959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 16101278 - 16101314
Alignment:
Q  161 aaaattttacagggactaaaatgtgcgattttatttt 197  Q
    ||||||||||||||||||||  |||||||||||||||    
T  16101278 aaaattttacagggactaaatagtgcgattttatttt 16101314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 25903573 - 25903671
Alignment:
Q  154 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 253  Q
    ||||| |||||||||| ||||| |||||  || ||||||||||||| ||||| | ||||  ||||| ||| ||||||||||||  || ||||||||||||    
T  25903573 ttgatggaaaattttatagggattaaaaaatgtgattttattttat-agggactaaaaacaaaattttaaatatttatagggaccat-ttacttaattaa 25903670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 22162 - 22202
Alignment:
Q  160 gaaaattttacagggactaaaatgtgcgattttattttata 200  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  22162 gaaaatgttacagggactaaaaagtgtgattttattttata 22202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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