View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3989_low_4 (Length: 335)
Name: NF3989_low_4
Description: NF3989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3989_low_4 |
 | |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 5468760 - 5468450
Alignment:
| Q |
1 |
atcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggttaatttacatttggttctatatgtgtttaatttatatcatttggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5468760 |
atcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggttaatttacatttggttctatatgtgtttaatttatatcatttggta |
5468661 |
T |
|
| Q |
101 |
gaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5468660 |
gaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagtt |
5468561 |
T |
|
| Q |
201 |
gtcttcctcgtatgtccatgcaccttttttcacacctatggtattatccatatccatacccacacctttaatatcctcgtataccctttccttaatcaac |
300 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5468560 |
gtcttcctcgtatgtccatgcaccttttttcacgcctatggtattatccatatccatacccacacctttaatatcctcgtataccctttccttaatcaac |
5468461 |
T |
|
| Q |
301 |
ttcatacacaa |
311 |
Q |
| |
|
|||||| |||| |
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|
| T |
5468460 |
ttcatatacaa |
5468450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 33823144 - 33823249
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc |
231 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| || |
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|
| T |
33823144 |
acctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgcaccttttctc |
33823243 |
T |
|
| Q |
232 |
acacct |
237 |
Q |
| |
|
| |||| |
|
|
| T |
33823244 |
aaacct |
33823249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 33750178 - 33750264
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtcca |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||| |
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|
| T |
33750178 |
acctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtcca |
33750264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 33867306 - 33867411
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc |
231 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||| | || |||||||||||| |||||||||| |||||||||||||||||| || |
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|
| T |
33867306 |
acctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc |
33867405 |
T |
|
| Q |
232 |
acacct |
237 |
Q |
| |
|
|||||| |
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|
| T |
33867406 |
acacct |
33867411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 33763708 - 33763828
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc |
231 |
Q |
| |
|
||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||| |||||| ||||| |
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|
| T |
33763708 |
acctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacctcttttc |
33763807 |
T |
|
| Q |
232 |
acacctatggtattatccata |
252 |
Q |
| |
|
|| || | |||||||||||| |
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|
| T |
33763808 |
actgctctcgtattatccata |
33763828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 33904850 - 33904960
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc |
231 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||| | || |||||||||||| |||||||||| |||||||||||||||||| || |
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| T |
33904850 |
acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc |
33904949 |
T |
|
| Q |
232 |
acacctatggt |
242 |
Q |
| |
|
|| ||| |||| |
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|
| T |
33904950 |
acgcctctggt |
33904960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 33736438 - 33736534
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt |
228 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| | || |||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
33736438 |
acctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt |
33736534 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 33698932 - 33699025
Alignment:
| Q |
144 |
aggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacct |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||| |||||||||||||||||| ||| |||| |
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|
| T |
33698932 |
aggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctcaaacct |
33699025 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 33680386 - 33680507
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc |
231 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||| || | ||| | ||||||||| |||| ||||| |||||||||||||||||| || |
|
|
| T |
33680386 |
acctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttctc |
33680485 |
T |
|
| Q |
232 |
acacctatggtattatccatat |
253 |
Q |
| |
|
| |||| |||| || ||||||| |
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|
| T |
33680486 |
aaacctctggtcttttccatat |
33680507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 149252 - 149353
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc |
231 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||| | ||||||||||||||||| ||||||||| || |
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|
| T |
149252 |
acctgctctttgaggaactaaatgccattttccttccccatacttgtcaatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctc |
149351 |
T |
|
| Q |
232 |
ac |
233 |
Q |
| |
|
|| |
|
|
| T |
149352 |
ac |
149353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 19950 - 19854
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt |
228 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||| || ||||||| || |||||||||||||||||| |
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|
| T |
19950 |
acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt |
19854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 23398 - 23302
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt |
228 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||| || ||||||| || |||||||||||||||||| |
|
|
| T |
23398 |
acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt |
23302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 88989 - 88869
Alignment:
| Q |
132 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc |
231 |
Q |
| |
|
|||||||||| |||||| || |||||||||||||| |||||||||||||||| | |||||||||||| | ||||| || | ||||| | |||||||||| |
|
|
| T |
88989 |
acctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtaccttttttc |
88890 |
T |
|
| Q |
232 |
acacctatggtattatccata |
252 |
Q |
| |
|
|| || |||||||||||||| |
|
|
| T |
88889 |
acgccactggtattatccata |
88869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 253
Target Start/End: Original strand, 21306326 - 21306437
Alignment:
| Q |
142 |
tgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagct-gtcttcctcgtatgtccatgcaccttttttcacacctatg |
240 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||| |||||||| ||||||||||| |||| ||||||| ||| |||||||| |||||| |||||||| | |
|
|
| T |
21306326 |
tgaggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagt-agctcatcttccttgtaagtccatgcgccttttctcacacctccg |
21306424 |
T |
|
| Q |
241 |
gtattatccatat |
253 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
21306425 |
gtattctccatat |
21306437 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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