View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3989_low_5 (Length: 333)
Name: NF3989_low_5
Description: NF3989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3989_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 34382298 - 34382041
Alignment:
| Q |
13 |
atgtgaaatctattttcccagcaaaaagaaatctatcatctttcacacaaaaaaccgaaacacgcttcaatactcattttttaagaaagctcaaacacaa |
112 |
Q |
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| T |
34382298 |
atgtgaaatctattttcccagcaaaaagaaatctatcatctttcacacaaaaaaccgaaacacacttcaacactcattttttaagaaagctcaaacacaa |
34382199 |
T |
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| Q |
113 |
cagctaagccaattactttcctatgaatccatttagtttcatcatcaccaatctccttctttgcacaaaccagtaaccaccaaaaattcaacattggacc |
212 |
Q |
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| T |
34382198 |
cagctaagccaattactttcctatgaatccatttaatttcatcatcatcaatctccttctttgcacaaaccagttaccaccaaaaattcaacattggacc |
34382099 |
T |
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| Q |
213 |
aacatcaaccgcggccacggatggtaccatccagccaccctcagggtccatgtattca |
270 |
Q |
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| T |
34382098 |
aacatcaaccgcggccacggatagtaccatccagccaccctcagggtccatgtattca |
34382041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 34367742 - 34367666
Alignment:
| Q |
47 |
atcatctttcacacaaaaaaccgaaacacgcttcaatactcattttttaagaaagctcaaacacaacagctaagcca |
123 |
Q |
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||||| ||||||||||||||||||||||| |||| | |||||||||||| ||||||| |||||||||| |||||||| |
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| T |
34367742 |
atcatttttcacacaaaaaaccgaaacacccttcgacactcattttttatgaaagctaaaacacaacatctaagcca |
34367666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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