View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3989_low_6 (Length: 315)

Name: NF3989_low_6
Description: NF3989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3989_low_6
NF3989_low_6
[»] chr3 (25 HSPs)
chr3 (48-304)||(22530202-22530459)
chr3 (48-304)||(29549202-29549459)
chr3 (54-255)||(6921069-6921270)
chr3 (3-53)||(6156722-6156772)
chr3 (1-53)||(17208536-17208588)
chr3 (3-53)||(2841496-2841546)
chr3 (3-53)||(14520458-14520508)
chr3 (10-53)||(3527154-3527197)
chr3 (6-53)||(14442187-14442234)
chr3 (8-53)||(22841274-22841319)
chr3 (9-53)||(14641544-14641588)
chr3 (13-53)||(54875474-54875514)
chr3 (3-53)||(5215659-5215709)
chr3 (8-53)||(12917301-12917346)
chr3 (12-53)||(14152398-14152439)
chr3 (8-53)||(45803326-45803371)
chr3 (9-53)||(6159417-6159461)
chr3 (3-43)||(13185917-13185957)
chr3 (3-43)||(19568198-19568238)
chr3 (9-53)||(29907651-29907695)
chr3 (9-53)||(29948817-29948861)
chr3 (9-53)||(29997971-29998015)
chr3 (3-43)||(40808018-40808058)
chr3 (3-43)||(40812855-40812895)
chr3 (3-43)||(44274440-44274480)
[»] chr4 (16 HSPs)
chr4 (60-255)||(54874533-54874728)
chr4 (60-226)||(33096113-33096279)
chr4 (6-54)||(9622500-9622548)
chr4 (3-53)||(14631147-14631197)
chr4 (3-53)||(16296950-16297000)
chr4 (9-53)||(10273395-10273439)
chr4 (10-53)||(55583208-55583251)
chr4 (183-264)||(13154250-13154330)
chr4 (9-53)||(9639022-9639066)
chr4 (13-53)||(12424290-12424330)
chr4 (1-53)||(13847213-13847265)
chr4 (12-53)||(26446219-26446260)
chr4 (3-43)||(15115244-15115284)
chr4 (7-47)||(15239810-15239850)
chr4 (3-43)||(19434549-19434589)
chr4 (9-53)||(25513863-25513907)
[»] scaffold0231 (1 HSPs)
scaffold0231 (1-53)||(17509-17561)
[»] chr2 (8 HSPs)
chr2 (3-53)||(21315466-21315516)
chr2 (3-53)||(21335256-21335306)
chr2 (9-53)||(23801508-23801552)
chr2 (12-53)||(23610638-23610679)
chr2 (80-261)||(24733970-24734151)
chr2 (9-53)||(149497-149541)
chr2 (9-53)||(21369305-21369349)
chr2 (3-43)||(24516208-24516248)
[»] chr8 (10 HSPs)
chr8 (5-53)||(21399729-21399777)
chr8 (5-53)||(21794222-21794270)
chr8 (9-53)||(22208281-22208325)
chr8 (9-53)||(22345176-22345220)
chr8 (9-53)||(22356836-22356880)
chr8 (3-53)||(18816285-18816335)
chr8 (8-53)||(22610262-22610307)
chr8 (12-53)||(36732411-36732452)
chr8 (13-53)||(18834434-18834474)
chr8 (17-53)||(22483798-22483834)
[»] chr5 (6 HSPs)
chr5 (1-53)||(18744886-18744938)
chr5 (9-53)||(32607312-32607356)
chr5 (8-53)||(16063763-16063808)
chr5 (9-53)||(21398640-21398684)
chr5 (13-53)||(23199207-23199247)
chr5 (2-43)||(20469165-20469206)
[»] scaffold1186 (1 HSPs)
scaffold1186 (3-53)||(2032-2082)
[»] scaffold0005 (1 HSPs)
scaffold0005 (3-53)||(186186-186236)
[»] chr7 (24 HSPs)
chr7 (3-53)||(708419-708469)
chr7 (3-53)||(15575639-15575689)
chr7 (3-53)||(18874655-18874705)
chr7 (3-53)||(20252172-20252222)
chr7 (6-52)||(47095465-47095511)
chr7 (9-53)||(58409-58453)
chr7 (9-53)||(38299760-38299804)
chr7 (3-53)||(3287756-3287806)
chr7 (9-51)||(13744506-13744548)
chr7 (8-53)||(18570659-18570704)
chr7 (8-53)||(33556100-33556145)
chr7 (9-53)||(19195623-19195667)
chr7 (13-53)||(25943279-25943319)
chr7 (2-53)||(8488083-8488134)
chr7 (2-53)||(8513742-8513793)
chr7 (6-53)||(36300634-36300681)
chr7 (1-43)||(48807313-48807355)
chr7 (177-226)||(16541658-16541707)
chr7 (177-226)||(16623955-16624004)
chr7 (12-53)||(43745668-43745709)
chr7 (9-53)||(8930761-8930805)
chr7 (9-53)||(13315078-13315122)
chr7 (3-43)||(20586374-20586414)
chr7 (13-53)||(43276744-43276784)
[»] chr1 (13 HSPs)
chr1 (3-53)||(50544884-50544934)
chr1 (8-53)||(34392780-34392825)
chr1 (9-53)||(8306618-8306662)
chr1 (9-53)||(35895111-35895155)
chr1 (9-53)||(38056668-38056712)
chr1 (9-53)||(45499554-45499598)
chr1 (8-47)||(7703140-7703179)
chr1 (11-53)||(17901792-17901834)
chr1 (8-53)||(20588650-20588695)
chr1 (8-53)||(20593188-20593233)
chr1 (3-43)||(7051912-7051952)
chr1 (13-53)||(22145666-22145706)
chr1 (9-53)||(28476730-28476774)
[»] scaffold0676 (1 HSPs)
scaffold0676 (9-53)||(2893-2937)
[»] scaffold0220 (1 HSPs)
scaffold0220 (9-53)||(13961-14005)
[»] chr6 (7 HSPs)
chr6 (9-53)||(10446229-10446273)
chr6 (12-53)||(21683074-21683115)
chr6 (9-52)||(19825482-19825525)
chr6 (11-53)||(29045283-29045325)
chr6 (3-43)||(15890702-15890742)
chr6 (1-53)||(18982584-18982636)
chr6 (9-53)||(23658101-23658145)
[»] scaffold0004 (2 HSPs)
scaffold0004 (2-53)||(111372-111423)
scaffold0004 (9-53)||(75949-75993)
[»] scaffold0594 (1 HSPs)
scaffold0594 (3-53)||(2259-2309)
[»] scaffold0149 (1 HSPs)
scaffold0149 (2-43)||(21633-21674)
[»] scaffold0139 (1 HSPs)
scaffold0139 (12-53)||(23546-23587)
[»] scaffold0048 (1 HSPs)
scaffold0048 (6-51)||(68719-68764)
[»] scaffold0878 (1 HSPs)
scaffold0878 (9-53)||(3418-3462)
[»] scaffold0853 (1 HSPs)
scaffold0853 (13-53)||(2454-2494)
[»] scaffold0431 (1 HSPs)
scaffold0431 (13-53)||(5645-5685)
[»] scaffold0328 (1 HSPs)
scaffold0328 (9-53)||(18636-18680)
[»] scaffold0174 (2 HSPs)
scaffold0174 (9-53)||(19868-19912)
scaffold0174 (9-53)||(5466-5510)
[»] scaffold0061 (2 HSPs)
scaffold0061 (9-53)||(14582-14626)
scaffold0061 (9-53)||(23640-23684)
[»] scaffold0031 (1 HSPs)
scaffold0031 (9-53)||(127339-127383)
[»] scaffold0108 (1 HSPs)
scaffold0108 (6-53)||(6430-6477)
[»] scaffold0207 (1 HSPs)
scaffold0207 (1-43)||(13380-13422)
[»] scaffold0098 (1 HSPs)
scaffold0098 (3-53)||(40119-40169)
[»] scaffold0205 (1 HSPs)
scaffold0205 (6-51)||(5609-5653)
[»] scaffold0086 (1 HSPs)
scaffold0086 (8-53)||(35181-35226)
[»] scaffold0056 (1 HSPs)
scaffold0056 (12-53)||(18287-18328)
[»] scaffold1941 (1 HSPs)
scaffold1941 (3-43)||(160-200)
[»] scaffold0802 (1 HSPs)
scaffold0802 (3-43)||(4699-4739)
[»] scaffold0555 (1 HSPs)
scaffold0555 (9-53)||(8742-8786)
[»] scaffold0414 (1 HSPs)
scaffold0414 (13-53)||(11160-11200)
[»] scaffold0379 (1 HSPs)
scaffold0379 (13-53)||(10959-10999)
[»] scaffold0241 (1 HSPs)
scaffold0241 (3-43)||(3204-3244)
[»] scaffold0148 (1 HSPs)
scaffold0148 (9-53)||(8856-8900)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 48 - 304
Target Start/End: Original strand, 22530202 - 22530459
Alignment:
Q  48 ggttgtcaatcttctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgt 147  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  22530202 ggttctcaatcttctctcaataacgactggtcaaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtatgggaaagaagt 22530301  T
Q  148 tgggggtaaactttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcg 247  Q
    |||||||||| || |||| ||||||||  ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||    
T  22530302 tgggggtaaatttccaaggggatatttctaataggtttgatgttctgtcaggtgtgggaagaaaaaataaagagggtaacggggaagggaagtgaggtcg 22530401  T
Q  248 agggttggtgggaggtgcgacggtg-gttttggtgtggtggagtagtagtagtgatga 304  Q
    ||| ||||||||||||| || ||||  ||||||||||||||||| ||||| |||||||    
T  22530402 aggattggtgggaggtgtgagggtgttttttggtgtggtggagtggtagtggtgatga 22530459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 48 - 304
Target Start/End: Complemental strand, 29549459 - 29549202
Alignment:
Q  48 ggttgtcaatcttctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgt 147  Q
    |||| |||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| |    
T  29549459 ggttctcaatcatctattaataatgactggtcgaattggttggttcttcatggaagtagtaaggctatttcggatgatgttaaaggaatgggaaagatat 29549360  T
Q  148 tgggggtaaactttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcg 247  Q
    ||||||| || ||||||| |||||   ||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  29549359 tgggggtgaattttcaaggggatacacaaagtaggtttaatgtattgtcaggtgcgggaagaaaaaataaagagggtgatggggaagagaagtgaggccg 29549260  T
Q  248 agggttggtgggaggtg-cgacggtggttttggtgtggtggagtagtagtagtgatga 304  Q
    |||||||||||||||||  || ||||| ||||||||||| |||| || || |||||||    
T  29549259 agggttggtgggaggtgtggagggtgggtttggtgtggtagagtggtcgtggtgatga 29549202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 6921069 - 6921270
Alignment:
Q  54 caatcttctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttggggg 153  Q
    ||||| ||||| ||||| ||||||||||||||||| || |||||||| | ||| |||||| | |||||||||||||  ||  |||| ||| || || |||    
T  6921069 caatcatctgttaataatgactggtcgaattggttagtacttcatggtaatagcaaggctttatcggatgatgttagggggatgggtaagttggtgaggg 6921168  T
Q  154 taaactttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggtt 253  Q
    | || ||||||| ||||| | |||||||||||||||| |||||||| || || |||||||||||||||||||| || | |||||  | ||||||||||||    
T  6921169 tgaattttcaaggggataatcaaaataggtttgatgtgttgtcaggagctggtagaaaaaataaagagggtgatggtggagagagttaaggtcgagggtt 6921268  T
Q  254 gg 255  Q
    ||    
T  6921269 gg 6921270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 6156772 - 6156722
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  6156772 tcgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 6156722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17208588 - 17208536
Alignment:
Q  1 aatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  17208588 aatcgatcaatctaaggtaagggtgggactagctttctctaataatgagttgt 17208536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 2841496 - 2841546
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  2841496 tcgatcaatctaaggtaagggtgtgactagctttctctaataatgggttgt 2841546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 14520508 - 14520458
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  14520508 tcgatcaatctaaggtaagggtgggactagctttctttaataatgggttgt 14520458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 3527154 - 3527197
Alignment:
Q  10 atctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  3527154 atctaaggtaagggtgggactagctttctctaataatgggttgt 3527197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 14442234 - 14442187
Alignment:
Q  6 atcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  14442234 atcaatctaaggtaagggtgggactagctttctgtaataatgggttgt 14442187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 22841274 - 22841319
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||    
T  22841274 caatctaatgtaagggtgggactagctttctctaataatgggttgt 22841319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 14641544 - 14641588
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  14641544 aatctaaggtaagggtgggattagctttctctaataatgggttgt 14641588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 54875474 - 54875514
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  54875474 taaggtaagggtgggactagctttctctaataatgggttgt 54875514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 5215709 - 5215659
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||| |||||||||||| | ||||||||| |||||||||| |||||    
T  5215709 tcgatcaatataaggtaagggtggcactagctttctctaataatgagttgt 5215659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 12917301 - 12917346
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||| ||||||| |||||| |||| ||||||||||||||||    
T  12917301 caatctaagataagggtgggactaactttctctaataatgggttgt 12917346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 14152398 - 14152439
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  14152398 ctaaggtaagggtgggactagctttctctaataatgagttgt 14152439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 45803326 - 45803371
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||| || ||||| ||||||||||| ||||||||||||||||    
T  45803326 caatctaaagttagggtgggactagctttctctaataatgggttgt 45803371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 6159461 - 6159417
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||    
T  6159461 aatctaaggtaagggtgagactcgctttctctaataatgggttgt 6159417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 13185957 - 13185917
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  13185957 tcgatcaatctaaggtaagggtgggactaactttctctaat 13185917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 19568198 - 19568238
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  19568198 tcgatcaatctaaggtaagggtgggactaactttctctaat 19568238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 29907695 - 29907651
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  29907695 aatctaaggtaagggtgggactagctttctttaatattgggttgt 29907651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 29948861 - 29948817
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  29948861 aatctaaggtaagggtgggactagctttctttaatattgggttgt 29948817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 29998015 - 29997971
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  29998015 aatctaaggtaagggtgggactagctttctttaatattgggttgt 29997971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 40808058 - 40808018
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  40808058 tcgatcaatctaaggtaagggtgggactaactttctctaat 40808018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 40812895 - 40812855
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  40812895 tcgatcaatctaaggtaagggtgggactaactttctctaat 40812855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 44274480 - 44274440
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  44274480 tcgatcaatctaaggtaagggtgggactaactttctctaat 44274440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 54874728 - 54874533
Alignment:
Q  60 tctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaact 159  Q
    ||||| ||| |||||||||||| |||||| || |||||||| | ||| |||||| | |||||||||||||  ||  |||||||| |  ||||||| || |    
T  54874728 tctgttaattacgactggtcgagttggttagtacttcatggtaatagcaaggctttatcggatgatgttagggggatgggaaagttagtgggggtgaatt 54874629  T
Q  160 ttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttgg 255  Q
    |||||| ||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||| ||| || | ||||| || ||| ||||||||||    
T  54874628 ttcaaggggatattcaaaataggtttgatgtgttgtcaggtgttggaagaaaaaataaagaggttgatggtggagagaggtaaggccgagggttgg 54874533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 33096113 - 33096279
Alignment:
Q  60 tctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaact 159  Q
    ||||| ||||| ||||||  ||||||||||| ||||||||||||| || ||| |||||| | ||| ||||  | | |||||||| || ||||| | || |    
T  33096113 tctgttaataatgactggatgaattggttggctcttcatggaagtggtgaggttatgtcagctgacgttagggatttgggaaaggtggtggggttgaatt 33096212  T
Q  160 ttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtga 226  Q
    |||||| |||||   | |||  ||| ||||| |||||||||||||||||||||||||||||||||||    
T  33096213 ttcaaggggataagaataatcagttcgatgtgttgtcaggtgcgggaagaaaaaataaagagggtga 33096279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 9622548 - 9622500
Alignment:
Q  6 atcaatctaaggtaagggtcggactagctttttctaataatgggttgtc 54  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  9622548 atcaatctaaggtaagggtgggactagctttctctaataatgggttgtc 9622500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 14631197 - 14631147
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  14631197 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 14631147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 16297000 - 16296950
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  16297000 tcgatcaatctaaggtaagggtgggactagctttctctaataatgagttgt 16296950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 10273439 - 10273395
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  10273439 aatctaaggtaagggtgggactagctttctctaataatgggttgt 10273395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 55583251 - 55583208
Alignment:
Q  10 atctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  55583251 atctaaggtaagggtgggactagctttctctaataatgggttgt 55583208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 13154250 - 13154330
Alignment:
Q  183 tttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttggtgggaggtg 264  Q
    |||||||| |||||||| | ||||||||||||||||||||| || ||| ||| ||||| ||| | |||||||||| ||||||    
T  13154250 tttgatgtgttgtcaggggtgggaagaaaaaataaagagggagatgggaaagggaagt-aggccaagggttggtgtgaggtg 13154330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 9639066 - 9639022
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  9639066 aatctaaggtaagggtgggactagctttctctaataatgagttgt 9639022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 12424290 - 12424330
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  12424290 taaggtaagggtgggactagctttctctaataatgggttgt 12424330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13847265 - 13847213
Alignment:
Q  1 aatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||| || |||||||||||||  |||||||||| ||||||||||||||||    
T  13847265 aatcgattaacctaaggtaagggtgagactagctttctctaataatgggttgt 13847213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 26446260 - 26446219
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||| |||||||| ||||||||||| ||||||||||||||||    
T  26446260 ctaaagtaagggtaggactagctttctctaataatgggttgt 26446219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 15115284 - 15115244
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  15115284 tcgatcaatctaaggtaagggtgggactaactttctctaat 15115244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 15239810 - 15239850
Alignment:
Q  7 tcaatctaaggtaagggtcggactagctttttctaataatg 47  Q
    ||||||||||||||||||  |||||||||| ||||||||||    
T  15239810 tcaatctaaggtaagggtgagactagctttctctaataatg 15239850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 19434549 - 19434589
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  19434549 tcgatcaatctaaggtaagggtgggactaactttctctaat 19434589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 25513907 - 25513863
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||| ||||||||||| |||||||||| |||||    
T  25513907 aatctaaggtaatggtgggactagctttctctaataatgagttgt 25513863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17509 - 17561
Alignment:
Q  1 aatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17509 aatcgatcaatctaaggtaagggtcggactagctttttctaataatggattgt 17561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 21315466 - 21315516
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21315466 tcgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21315516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 21335256 - 21335306
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21335256 tcgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21335306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 23801552 - 23801508
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  23801552 aatctaaggtaagggtgggactagctttctctaataatgggttgt 23801508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 23610679 - 23610638
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  23610679 ctaaggtaagggtgggactagctttctctaataatgggttgt 23610638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 261
Target Start/End: Original strand, 24733970 - 24734151
Alignment:
Q  80 gaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaactttcaagaggatatttaaaat 179  Q
    ||||||||||||||||||||| | ||| ||||  ||||| ||||||||||| ||| ||||||||    ||||| |    ||| ||| |||||   | |||    
T  24733970 gaattggttggttcttcatggtaatagcaaggtgatgtcagatgatgttaagggtatgggaaaggcagtggggttgtcttttaaaggggataagcataat 24734069  T
Q  180 aggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttggtgggag 261  Q
    | |||||| || |||||||| ||||||||||||| || |||| |||| |||  || ||||| ||||||||||| | ||||||    
T  24734070 atgtttgaagtgttgtcaggagcgggaagaaaaattagagagagtgatgggttagggaagtaaggtcgagggtggttgggag 24734151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 149497 - 149541
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| | ||||||||| |||||||||| |||||    
T  149497 aatctaaggtaagggtggaactagctttctctaataatgagttgt 149541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 21369349 - 21369305
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| |||| |||||| ||||| ||||||||||    
T  21369349 aatctaaggtaagggtgggacaagctttctctaacaatgggttgt 21369305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 24516248 - 24516208
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  24516248 tcgatcaatctaaggtaagggtgggactaactttctctaat 24516208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 21399777 - 21399729
Alignment:
Q  5 gatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21399777 gatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21399729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 21794270 - 21794222
Alignment:
Q  5 gatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21794270 gatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21794222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 22208325 - 22208281
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22208325 aatctaaggtaagggtgggactagctttctctaataatgggttgt 22208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 22345220 - 22345176
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22345220 aatctaaggtaagggtgggactagctttctctaataatgggttgt 22345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 22356880 - 22356836
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22356880 aatctaaggtaagggtgggactagctttctctaataatgggttgt 22356836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 18816285 - 18816335
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  18816285 tcgatcaatataaggtaagggtgggactagctttctctaaaaatgggttgt 18816335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 22610262 - 22610307
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||| |||||| |||| |||||||||| |||||    
T  22610262 caatctaaggtaagggtgggactaactttctctaataatgagttgt 22610307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 36732411 - 36732452
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  36732411 ctaaggtaagggtgtgactagctttctctaataatgggttgt 36732452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 18834474 - 18834434
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||||||||||| ||||||||||| ||||    
T  18834474 taaggtaagggtgggactagctttctctaataatggattgt 18834434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 22483834 - 22483798
Alignment:
Q  17 gtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  22483834 gtaagggtgggactagctttctctaataatgggttgt 22483798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18744938 - 18744886
Alignment:
Q  1 aatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  18744938 aatcgatcaatctaaggtaagggtgggactaactttctctaataatgggttgt 18744886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 32607312 - 32607356
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  32607312 aatctaaggtaagggtgggactagctttctctaataatgggttgt 32607356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 16063808 - 16063763
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||    
T  16063808 caatctaaggtaagggtgggactacctttctctaataatgggttgt 16063763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 21398640 - 21398684
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  21398640 aatctaaggtaagggtgggattagctttctctaataatgggttgt 21398684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 23199207 - 23199247
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  23199207 taaggtaagggtgggactagctttctctaataatgggttgt 23199247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 20469165 - 20469206
Alignment:
Q  2 atcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  20469165 atcgatcaatctaaggtaagggtgggactaactttctctaat 20469206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 2082 - 2032
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  2082 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 186186 - 186236
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  186186 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 186236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 708419 - 708469
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  708419 tcgatcaatctaaggtaggggtgggactagctttctctaataatgggttgt 708469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 15575639 - 15575689
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  15575639 tcgatcaatctaaggtaggggtgggactagctttctctaataatgggttgt 15575689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 18874655 - 18874705
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  18874655 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 18874705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 20252172 - 20252222
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  20252172 tcgatcaatctaaggtaagggtaggactagctttctctaataatgagttgt 20252222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 47095511 - 47095465
Alignment:
Q  6 atcaatctaaggtaagggtcggactagctttttctaataatgggttg 52  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  47095511 atcaatctaaggtaagggtgggactagctttctctaataatgggttg 47095465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 58409 - 58453
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  58409 aatctaaggtaagggtgggactagctttctctaataatgggttgt 58453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 38299804 - 38299760
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  38299804 aatctaaggtaagggtgggactagctttctctaataatgggttgt 38299760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 3287806 - 3287756
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| ||||||    
T  3287806 tcgatcaatctaaggtaagggtgagactagctttctctaataataggttgt 3287756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 13744506 - 13744548
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggtt 51  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  13744506 aatctaaggtaagggtgggactagctttctctaataatgggtt 13744548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 18570704 - 18570659
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||    
T  18570704 caatctaaggtaagggtgagactagctttctctaataatgggttgt 18570659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 33556100 - 33556145
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  33556100 caatctaagataagggtgggactagctttctctaataatgggttgt 33556145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 19195667 - 19195623
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  19195667 aatctaaggtaagggtgggactagctttctctaataatgagttgt 19195623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 25943319 - 25943279
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  25943319 taaggtaagggtgggactagctttctctaataatgggttgt 25943279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 8488083 - 8488134
Alignment:
Q  2 atcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||| || ||||||||||||| |||||| |||| ||||||||||||||||    
T  8488083 atcgattaacctaaggtaagggtgggactaactttctctaataatgggttgt 8488134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 8513742 - 8513793
Alignment:
Q  2 atcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||| || ||||||||||||| |||||| |||| ||||||||||||||||    
T  8513742 atcgattaacctaaggtaagggtgggactaactttctctaataatgggttgt 8513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 36300634 - 36300681
Alignment:
Q  6 atcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  36300634 atcaatctaaggtaaaggtgagactagctttctctaataatgggttgt 36300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48807313 - 48807355
Alignment:
Q  1 aatcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||||| |||||| |||| ||||||    
T  48807313 aatcgatcaatctaaggtaagggtgggactaactttctctaat 48807355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 16541658 - 16541707
Alignment:
Q  177 aataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtga 226  Q
    |||| ||||||||| ||||| || ||||||||||||||||| ||||||||    
T  16541658 aatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga 16541707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 16624004 - 16623955
Alignment:
Q  177 aataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtga 226  Q
    |||| ||||||||| ||||| || ||||||||||||||||| ||||||||    
T  16624004 aatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga 16623955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 43745709 - 43745668
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  43745709 ctaaggtaagggtgggactagctttctctaataatgagttgt 43745668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 8930761 - 8930805
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||  ||| ||||||||||||||||    
T  8930761 aatctaaggtaagggtgggactacatttctctaataatgggttgt 8930805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 13315078 - 13315122
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||  ||||| |||| ||||||||||||||||    
T  13315078 aatctaaggtaagggtgagactatctttctctaataatgggttgt 13315122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 20586414 - 20586374
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  20586414 tcgatcaatctaaggtaagggtgggactaactttctctaat 20586374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 43276744 - 43276784
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| |||||| |||| ||||||||||||||||    
T  43276744 taaggtaagggtgggactaactttctctaataatgggttgt 43276784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 50544934 - 50544884
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  50544934 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 50544884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 34392825 - 34392780
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||    
T  34392825 caatctaaggtaagggtgtgactagctttctctaataatgggttgt 34392780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 8306662 - 8306618
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  8306662 aatctaaggtaagagtgggactagctttctctaataatgggttgt 8306618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 35895155 - 35895111
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||    
T  35895155 aatctaaggtatgggtaggactagctttatctaataatgggttgt 35895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 38056668 - 38056712
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||    
T  38056668 aatctaaggtaagggtgggactagctttctctagtaatgggttgt 38056712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 45499598 - 45499554
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  45499598 aatctaaggtaagggtgagactagctttctctaataatgggttgt 45499554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 7703179 - 7703140
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatg 47  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  7703179 caatctaaggtaagggtgggactagctttctctaataatg 7703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 17901792 - 17901834
Alignment:
Q  11 tctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||  |||||||||| ||||||||||||||||    
T  17901792 tctaaggtaagggtgagactagctttctctaataatgggttgt 17901834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 20588695 - 20588650
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||| |||||||||||| ||| ||||||| ||||||||||||||||    
T  20588695 caatttaaggtaagggtgggattagctttctctaataatgggttgt 20588650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 20593233 - 20593188
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||| |||||||||||| ||| ||||||| ||||||||||||||||    
T  20593233 caatttaaggtaagggtgggattagctttctctaataatgggttgt 20593188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 7051912 - 7051952
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  7051912 tcgatcaatctaaggtaagggtgggactaactttctctaat 7051952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 22145666 - 22145706
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| |||||| |||| ||||||||||||||||    
T  22145666 taaggtaagggtgggactaactttctctaataatgggttgt 22145706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 28476730 - 28476774
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||| ||| |||||||||| |||||    
T  28476730 aatctaaggtaagggtgggactagatttctctaataatgagttgt 28476774  T

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Target: scaffold0676 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 2937 - 2893
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  2937 aatctaaggtaagggtgggactagctttctctaataatgggttgt 2893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14005 - 13961
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  14005 aatctaaggtaagggtgggactagctttctctaataatgggttgt 13961  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 10446273 - 10446229
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  10446273 aatctaaggtaagggtgggactagctttctctaataatgggttgt 10446229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 21683074 - 21683115
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  21683074 ctaaggtaagggtgggactagctttctctaataatgggttgt 21683115  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 19825482 - 19825525
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttg 52  Q
    ||||||||||||||||  |||||||||| |||||||||||||||    
T  19825482 aatctaaggtaagggtgagactagctttctctaataatgggttg 19825525  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 29045325 - 29045283
Alignment:
Q  11 tctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||  |||||||||| ||||||||||||||||    
T  29045325 tctaaggtaagggtgagactagctttctctaataatgggttgt 29045283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 15890702 - 15890742
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  15890702 tcgatcaatctaaggtaagggtgggactaactttctctaat 15890742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18982636 - 18982584
Alignment:
Q  1 aatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||| ||||||||||||||| ||| ||| || |||| ||||||||||||||||    
T  18982636 aatcaatcaatctaaggtaacggtgggattaactttatctaataatgggttgt 18982584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 23658145 - 23658101
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| |||||||||||  |||||||| ||||||    
T  23658145 aatctaaggtaagggtgggactagctttccctaataataggttgt 23658101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 111423 - 111372
Alignment:
Q  2 atcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||| |||||||||||||||| || |||||||| ||||||||||||||||    
T  111423 atcgattaatctaaggtaagggtggggctagctttctctaataatgggttgt 111372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 75993 - 75949
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| || |||||||||||||    
T  75993 aatctaaggtaagggtgggactagctttctccaataatgggttgt 75949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 2309 - 2259
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||| ||||||||||||||||| ||||||||||| | ||||||||||||||    
T  2309 tcgaccaatctaaggtaagggtgggactagctttctataataatgggttgt 2259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 21674 - 21633
Alignment:
Q  2 atcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  21674 atcgatcaatctaaggtaagggtgggactagctttctctaat 21633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 23587 - 23546
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  23587 ctaaggtaagggtaggactagctttctctaataatgggttgt 23546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 68719 - 68764
Alignment:
Q  6 atcaatctaaggtaagggtcggactagctttttctaataatgggtt 51  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  68719 atcaatctaaggtaagggtgggactacctttctctaataatgggtt 68764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 3418 - 3462
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  3418 aatctaaggtaagggtgggactagctttctctaataatgcgttgt 3462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 2454 - 2494
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  2454 taaggtaagggtgggactagctttctctaataatgggttgt 2494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 5685 - 5645
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  5685 taaggtaagggtgggactagctttctctaataatgggttgt 5645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 18636 - 18680
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  18636 aatctaaggtaagggtgggactagctttctctaataatgagttgt 18680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 19912 - 19868
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||    
T  19912 aatctaaggtaagggtaggactagatttctctaataatgggttgt 19868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 5510 - 5466
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| |||||| |||| |||||||||| |||||    
T  5510 aatctaaggtaagggtgggactacctttctctaataatgagttgt 5466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 14582 - 14626
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  14582 aatctaaggtaagggtgagactagctttctctaataatgggttgt 14626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 23640 - 23684
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  23640 aatctaaggtaagggtgagactagctttctctaataatgggttgt 23684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 127339 - 127383
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  127339 aatctaaggtaagggtgggactagctttctctaataatggattgt 127383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 6477 - 6430
Alignment:
Q  6 atcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||  |||||||||| |||||||||| |||||    
T  6477 atcaatctaaggtaagggtaagactagctttctctaataatgagttgt 6430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13380 - 13422
Alignment:
Q  1 aatcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||||| |||||| |||| ||||||    
T  13380 aatcgatcaatctaaggtaagggtgggactaactttctctaat 13422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 40169 - 40119
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||||||||| |  ||||| |||| ||||||||||||||||    
T  40169 tcgatcaatctaaggtaaggatgcgactaactttctctaataatgggttgt 40119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 5609 - 5653
Alignment:
Q  6 atcaatctaaggtaagggtcggactagctttttctaataatgggtt 51  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||    
T  5609 atcaatctaaggtaagggtgggactagc-ttctctaataatgggtt 5653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 35181 - 35226
Alignment:
Q  8 caatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||| | |||||||||  |||||||||||||||    
T  35181 caatctaaggtaagggtggtactagctttccctaataatgggttgt 35226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 18328 - 18287
Alignment:
Q  12 ctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  18328 ctaaggtaagggtgtgactagctttctctaataatgggttgt 18287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1941 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1941
Description:

Target: scaffold1941; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 200 - 160
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  200 tcgatcaatctaaggtaagggtgggactaactttctctaat 160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 4699 - 4739
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  4699 tcgatcaatctaaggtaagggtgggactaactttctctaat 4739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 8742 - 8786
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    ||||||||||||||||  |||||||||  ||||||||||||||||    
T  8742 aatctaaggtaagggtgagactagcttactctaataatgggttgt 8786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 11160 - 11200
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  11160 taaggtaaggatgggactagctttctctaataatgggttgt 11200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 10999 - 10959
Alignment:
Q  13 taaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  10999 taaggtaagggtggaactagctttctctaataatgggttgt 10959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 3244 - 3204
Alignment:
Q  3 tcgatcaatctaaggtaagggtcggactagctttttctaat 43  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  3244 tcgatcaatctaaggtaagggttggactaactttctctaat 3204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 8900 - 8856
Alignment:
Q  9 aatctaaggtaagggtcggactagctttttctaataatgggttgt 53  Q
    |||||||| ||||||| ||||||||||| ||||||||||| ||||    
T  8900 aatctaagttaagggtgggactagctttatctaataatggattgt 8856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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