View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3989_low_8 (Length: 250)
Name: NF3989_low_8
Description: NF3989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3989_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 45282538 - 45282305
Alignment:
| Q |
1 |
aatgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggt |
100 |
Q |
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| T |
45282538 |
aatgtgatcgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggt |
45282439 |
T |
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| Q |
101 |
cctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaa |
200 |
Q |
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| T |
45282438 |
cctgatggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaa |
45282339 |
T |
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| Q |
201 |
gcaacagacagtactaccgcaattgtcttgtctc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45282338 |
gcaacagacagtactaccgcaattgtcttgtctc |
45282305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 45274293 - 45274060
Alignment:
| Q |
3 |
tgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggtcc |
102 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45274293 |
tgtgatcgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcc |
45274194 |
T |
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| Q |
103 |
tgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagc |
202 |
Q |
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| T |
45274193 |
tgatggtcaccaagctgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagc |
45274094 |
T |
|
| Q |
203 |
aacagacagtactaccgcaattgtcttgtctctg |
236 |
Q |
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| T |
45274093 |
aacaggcagtactaccgcaattgtcttgtctctg |
45274060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 45293876 - 45293643
Alignment:
| Q |
3 |
tgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggtcc |
102 |
Q |
| |
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| T |
45293876 |
tgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagccggtcc |
45293777 |
T |
|
| Q |
103 |
tgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagc |
202 |
Q |
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| T |
45293776 |
tgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaacc |
45293677 |
T |
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| Q |
203 |
aacagacagtactaccgcaattgtcttgtctctg |
236 |
Q |
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| T |
45293676 |
aacaggcaattctaccgcaattgtgttatctctg |
45293643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 45302836 - 45302603
Alignment:
| Q |
3 |
tgtgattgaaattactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggtcc |
102 |
Q |
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|||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45302836 |
tgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacacagccggtcc |
45302737 |
T |
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| Q |
103 |
tgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagc |
202 |
Q |
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|| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |
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| T |
45302736 |
tgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacactttgtacgttcaaacc |
45302637 |
T |
|
| Q |
203 |
aacagacagtactaccgcaattgtcttgtctctg |
236 |
Q |
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||||| || | ||||||||||||| || |||||| |
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| T |
45302636 |
aacaggcaattctaccgcaattgtgttatctctg |
45302603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 45270755 - 45270547
Alignment:
| Q |
14 |
ttactaattaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgaaaacacagccggtcctgatggtcacc |
113 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |
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| T |
45270755 |
ttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgccggtatgc |
45270656 |
T |
|
| Q |
114 |
aagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagacagta |
213 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||| |||||| || | |
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| T |
45270655 |
aagctgtggcatttagaaacataggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaatt |
45270556 |
T |
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| Q |
214 |
ctaccgcaa |
222 |
Q |
| |
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||||||||| |
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| T |
45270555 |
ctaccgcaa |
45270547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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