View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3990_high_3 (Length: 320)

Name: NF3990_high_3
Description: NF3990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3990_high_3
NF3990_high_3
[»] chr5 (9 HSPs)
chr5 (18-320)||(17383551-17383854)
chr5 (22-320)||(17377184-17377489)
chr5 (217-320)||(17392453-17392558)
chr5 (172-253)||(20111938-20112019)
chr5 (191-253)||(13712176-13712238)
chr5 (173-253)||(19653900-19653980)
chr5 (191-253)||(19806905-19806967)
chr5 (193-253)||(1347935-1347995)
chr5 (22-58)||(17392345-17392381)
[»] chr1 (1 HSPs)
chr1 (22-317)||(26052902-26053196)
[»] chr2 (1 HSPs)
chr2 (191-253)||(15784656-15784718)
[»] scaffold0009 (2 HSPs)
scaffold0009 (191-255)||(40602-40666)
scaffold0009 (199-255)||(33992-34048)
[»] chr3 (3 HSPs)
chr3 (191-253)||(24912861-24912923)
chr3 (191-252)||(32226559-32226620)
chr3 (171-252)||(32242030-32242111)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 17383551 - 17383854
Alignment:
Q  18 tgattatctgtatttataagatgtgtgtattttcttttttgtgttgtgcctgtgcagatagaacgaaatctttccaataaacaaatcaatacaattgaga 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  17383551 tgattatctgtatttataagatgtatgtattttcttttttgtgttgtgcctgtgcagatagaacaaaatctttccaataaacaaatcaatacatttgaga 17383650  T
Q  118 aaagacttcccgtgcttgaaaacttaagggaacttcaactaacttggttcggatgcattcataactgggaggtggtagtgaaaatgctacagaattgtcc 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17383651 aaagccttcccgtgcttgaaaacttaagggaacttcaactaacttggttcggacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcc 17383750  T
Q  218 caaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttttacccgtccttatcttctattgagta-ttttacaaatcctattttg 316  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || ||| |||||||| ||||| ||||||| |||||||||||    
T  17383751 catacttcaaactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttctcttctatcgagtatttttacatatcctattttg 17383850  T
Q  317 tctc 320  Q
    ||||    
T  17383851 tctc 17383854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 17377184 - 17377489
Alignment:
Q  22 tatctgtatttataagatgtgtgtattttcttttttgtgttgtgcctgtgcagatagaacgaaatctttccaataaacaaatcaatacaattgagaaaag 121  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| || |||| |||||    
T  17377184 tatctgtatgtataagatgtatgtattttcttttttgtgttgtgtctgtgcagatagaacgaagtctttccgataaagaaatcaattcatttgacaaaag 17377283  T
Q  122 acttcccgtgcttgaaaacttaagggaacttcaactaacttggt-tc---ggat--gcattcataactgggaggtggtagtgaaaatgctacagaattgt 215  Q
     |||||| || |||||||| |||    |||||||||| |||||| ||   | ||  || ||||| |||||||||||||| ||||||||||||||||||||    
T  17377284 ccttcccatgtttgaaaacataaccagacttcaactatcttggtctccaagcattagcgttcatgactgggaggtggtattgaaaatgctacagaattgt 17377383  T
Q  216 cccaaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttttacccgtccttatcttctattgagta-ttttacaaatcctattt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  17377384 cccaaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttatacccgttcttatcttctattgagtatttttacaaatcctattt 17377483  T
Q  315 tgtctc 320  Q
    ||||||    
T  17377484 tgtctc 17377489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 17392453 - 17392558
Alignment:
Q  217 ccaaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttttacccgtccttatcttctattgagta--ttttacaaatcctattt 314  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| || ||| | ||||||| ||||  |||||||||||||||||    
T  17392453 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttactaatttttaccagttcttctattctattaagtattttttacaaatcctattt 17392552  T
Q  315 tgtctc 320  Q
    ||||||    
T  17392553 tgtctc 17392558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 20111938 - 20112019
Alignment:
Q  172 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||| ||||||  | ||||||||||||||| ||||| ||||||||||||||| | ||||  |||||||||||||||||    
T  20111938 gcattcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaagcacttaaaattgtaaaggtttgttt 20112019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 13712238 - 13712176
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||||||||||||| |  |||||||||||||||||||||   |||||||||||||||||    
T  13712238 ggtagtgaaaatgctacaaagctgtcccaaacttcaaactcttcgaattgtaaaggtttgttt 13712176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 19653980 - 19653900
Alignment:
Q  173 cattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    ||||||||||||||| | |||  |||||||||||||  ||||||||||||||||| ||||||  |||  ||||||||||||    
T  19653980 cattcataactgggaagaggttatgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgttt 19653900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 19806905 - 19806967
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    ||||||||||||||| || |||||||||||||| ||||||||| | |||  ||||||||||||    
T  19806905 ggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt 19806967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 1347995 - 1347935
Alignment:
Q  193 tagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||||||||  |||||||||| ||||||||||||||  |||||  ||||||||||||    
T  1347995 tagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 1347935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 17392345 - 17392381
Alignment:
Q  22 tatctgtatttataagatgtgtgtattttcttttttg 58  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17392345 tatctgtatttataagatgtatgtattttcttttttg 17392381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 317
Target Start/End: Complemental strand, 26053196 - 26052902
Alignment:
Q  22 tatctgtatttataagatgtgtgtattttcttttttgtgttgtgcctgtgcagatagaacgaaatctttccaataaacaaatcaatacaattgagaaaag 121  Q
    ||||||||||||||||||||    ||||||||||||||| |||| || ||||||| |  | || ||||||||||||| |||||||| || |||| |||||    
T  26053196 tatctgtatttataagatgt----attttcttttttgtgatgtggctatgcagattgggcaaagtctttccaataaagaaatcaattcatttgacaaaag 26053101  T
Q  122 acttcccgtgcttgaaaacttaagggaacttcaactaacttggttcggatgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaa 221  Q
     |||||| || ||||||||||||  |||||| |||||  |||||    | |||||||| |||||||||| || |||||||||||||||||||||||||||    
T  26053100 ccttcccatgtttgaaaacttaaccgaacttgaactattttggtctcaaggcattcatgactgggaggtagtggtgaaaatgctacagaattgtcccaaa 26053001  T
Q  222 cttcaaactcttaccattgtaaaggtttgtttattatagttact--aatttttacccgtccttatcttctattgagta-ttttacaaatcctattttgt 317  Q
    |||||  |||||  ||||| ||||||||||||| ||||||||||  || ||| ||| || ||| |||||||||||||| ||||||||||||||||||||    
T  26053000 cttcactctctttacattgcaaaggtttgtttaatatagttactaaaaatttcaccagttcttctcttctattgagtatttttacaaatcctattttgt 26052902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 15784656 - 15784718
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||  |||| |||||| |||||    
T  15784656 ggtagtgaaaatgctacagaattgtccaaaacttcaagctcttagaattgaaaaggtctgttt 15784718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 40602 - 40666
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtttat 255  Q
    |||| |||||||||| ||||||||||| ||||||||||||||| | |||  ||||||||||||||    
T  40602 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 40666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 33992 - 34048
Alignment:
Q  199 aaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtttat 255  Q
    ||||||| ||| ||||||| ||||||||||||||| | |||  ||||||||||||||    
T  33992 aaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 34048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 24912861 - 24912923
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||||||||||  || |||||||||||||||||||||| |  |||  ||||||||||||    
T  24912861 ggtagtgaaaatgctttaggattgtcccaaacttcaaactctaaaaattcaaaaggtttgttt 24912923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 32226559 - 32226620
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtt 252  Q
    ||||||| ||||||| ||  ||||||||||||||||||||||| | |||  |||||||||||    
T  32226559 ggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt 32226620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 32242111 - 32242030
Alignment:
Q  171 tgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtt 252  Q
    ||||||||||| ||| | | |||| || ||||||| ||  |||||||||| |||||||||||| | ||| ||||||||||||    
T  32242111 tgcattcataattggtatgaggtactgcaaatgctccattattgtcccaaccttcaaactctttcaattttaaaggtttgtt 32242030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University