View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3990_low_1 (Length: 480)
Name: NF3990_low_1
Description: NF3990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3990_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Complemental strand, 23324789 - 23324335
Alignment:
| Q |
7 |
tcgaagaatatgataattgttatcataatctttgaatgtactccgattgtcacaaagaaattcttaattcgtctagctcttgctcaaactcaacaagcat |
106 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23324789 |
tcgaacaaaatgataattgttatcataatctttgaatgtactccgattgtcacaaagaaattcttaattcgtctagctcttgctcaaactcaacaagcat |
23324690 |
T |
|
| Q |
107 |
gccataatcttcgaaggtactccaagatgcctcgggctcaacaggtatgcctccatgatgccccatggtccaatgtattgttggcgtcatgttggtggaa |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23324689 |
gtcataatcttcgaaggtactccaagatgcctcgggctcaacaggtatgtctccatgatgccccatgctccaatgtattgttggcgtcatgttggtggaa |
23324590 |
T |
|
| Q |
207 |
tcattagatacatgatcgtcgtatagactccaagatgcttcgagctctagctgaaactcagcaagcatgccataatcttcgaatggactccaagatgcct |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23324589 |
tcattagatacatgatcatcgtatagactccaagatgcttcgagctctagctgaaactcagcaagcatgccataatcttcgactggactccaagatgcct |
23324490 |
T |
|
| Q |
307 |
cgtgctcaaccagtatgtttccatgatgccctacactccattgtattgtttgactggaatcattagatacatgccttgccttaggtctggaagggatttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23324489 |
cgtgctcaaccagtatgtttccatgatgccctacactccattgtattgtttgactggaatcattagatacatgccttgccttaggtctggaagggatttg |
23324390 |
T |
|
| Q |
407 |
aagagtagaacttgaatcctcgtgacgaacctcaacattattctcaccaccatat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23324389 |
aagagtagaacttgaatcctcgtgacgaacctcaacattattctcaccaccatat |
23324335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 23235230 - 23235148
Alignment:
| Q |
379 |
gccttgccttaggtctggaagggatttgaagagtagaacttgaatcctcgtgacgaacctcaacattattctcaccaccatat |
461 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||| || |||||||||||||||| |||||| |||| |||| ||||||||||| |
|
|
| T |
23235230 |
gccttgcattaggtctgcgagggatttgcagagtggagcttgaatcctcgtgaccaacctcgacatcattcccaccaccatat |
23235148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University