View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3990_low_3 (Length: 336)
Name: NF3990_low_3
Description: NF3990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3990_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 38520024 - 38519734
Alignment:
| Q |
30 |
tttctcctttcgtcaaaatatgtatgcataatctattagaacttccctnnnnnnnnntctcttagaactaaaaatgaannnnnnnn-atatgtaaatata |
128 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
38520024 |
tttctcctttcgtcaaaatatgtatgcataatctcttagaacttccctaaaaaaaaatctcttagaactaaaaatgaatttttttttatatgtaaatata |
38519925 |
T |
|
| Q |
129 |
acaaaaatatcttaaaaagcaaaccactaagcagtttagttttggtcctaatgaggtttgtttgtcgaggtggatagtgatgagcgaaccatgagaaata |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38519924 |
acaaaaatatcttaaaaagcaaaccactaagcagtttagtttcggtcgtaatgaggtttgtttgtcgaggtggatagtgatgagcgaaccatgagaaata |
38519825 |
T |
|
| Q |
229 |
ccttttttacccctgtcttgttcttgttattccctcgattcttcttcgcagtctctcttctcagttctgattagcaatcgtagctatttct |
319 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38519824 |
cctattttacccctgtcttgttcttgttattccctcgattcttcttcgcagtctctcttctcagttctgattagcaatcgtagctatttct |
38519734 |
T |
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