View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3990_low_4 (Length: 320)
Name: NF3990_low_4
Description: NF3990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3990_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 4650363 - 4650073
Alignment:
| Q |
21 |
tgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgcagggatacagaattatatc |
120 |
Q |
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| T |
4650363 |
tgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgcagggatacagaattatatc |
4650264 |
T |
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| Q |
121 |
atggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagtgatat |
220 |
Q |
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| T |
4650263 |
atggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagtgatat |
4650164 |
T |
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| Q |
221 |
tcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgcttaaagaataat |
311 |
Q |
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| T |
4650163 |
tcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgcttaaagaataat |
4650073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 116 - 311
Target Start/End: Original strand, 23681988 - 23682186
Alignment:
| Q |
116 |
atatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagt |
215 |
Q |
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| T |
23681988 |
atatcatggtaaaatagcatttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaatagtggagaccaatggagt |
23682087 |
T |
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| Q |
216 |
gatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctt---tactacattgcttgattaatctctctatgcttaaagaataat |
311 |
Q |
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| T |
23682088 |
gatattcttggaaccaacactggtgaaaggactttcaaactccctgatcctctttactactacattgcttgattaatctctctatgcttaaagaataat |
23682186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 4645975 - 4645810
Alignment:
| Q |
115 |
tatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggag |
214 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||| | || |||||||||| |||||| ||||||||| |||||| |||||||| |
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| T |
4645975 |
tatatcatggtaaaacagcagttacatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattggagatcaatggag |
4645876 |
T |
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| Q |
215 |
tgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgc |
280 |
Q |
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| T |
4645875 |
tgatattcttggaaccaatactggtgaaaggactttcaagctccctgatcccctctactacattgc |
4645810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 41872375 - 41872254
Alignment:
| Q |
87 |
caaatttatggttgcagggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaa |
186 |
Q |
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||||||| |||| |||||||||| | |||||||||||||||| |||||| ||||||||| || |||||||||||||| || |||||||||| | || |
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| T |
41872375 |
caaatttgtggtctcagggatacatcaatatatcatggtaaaacagcagttacatacaaatcgtcagagagaaagaagctggaggaagaaggatacaaaa |
41872276 |
T |
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| Q |
187 |
ttattggaaacagtggagacca |
208 |
Q |
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| T |
41872275 |
tcattggaaacataggagacca |
41872254 |
T |
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