View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3990_low_5 (Length: 320)

Name: NF3990_low_5
Description: NF3990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3990_low_5
NF3990_low_5
[»] chr5 (9 HSPs)
chr5 (18-320)||(17383551-17383854)
chr5 (22-320)||(17377184-17377489)
chr5 (217-320)||(17392453-17392558)
chr5 (172-253)||(20111938-20112019)
chr5 (191-253)||(13712176-13712238)
chr5 (173-253)||(19653900-19653980)
chr5 (191-253)||(19806905-19806967)
chr5 (193-253)||(1347935-1347995)
chr5 (22-58)||(17392345-17392381)
[»] chr1 (1 HSPs)
chr1 (22-317)||(26052902-26053196)
[»] chr2 (1 HSPs)
chr2 (191-253)||(15784656-15784718)
[»] scaffold0009 (2 HSPs)
scaffold0009 (191-255)||(40602-40666)
scaffold0009 (199-255)||(33992-34048)
[»] chr3 (3 HSPs)
chr3 (191-253)||(24912861-24912923)
chr3 (191-252)||(32226559-32226620)
chr3 (171-252)||(32242030-32242111)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 17383551 - 17383854
Alignment:
Q  18 tgattatctgtatttataagatgtgtgtattttcttttttgtgttgtgcctgtgcagatagaacgaaatctttccaataaacaaatcaatacaattgaga 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  17383551 tgattatctgtatttataagatgtatgtattttcttttttgtgttgtgcctgtgcagatagaacaaaatctttccaataaacaaatcaatacatttgaga 17383650  T
Q  118 aaagacttcccgtgcttgaaaacttaagggaacttcaactaacttggttcggatgcattcataactgggaggtggtagtgaaaatgctacagaattgtcc 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17383651 aaagccttcccgtgcttgaaaacttaagggaacttcaactaacttggttcggacgcattcataactgggaggtggtagtgaaaatgctacagaattgtcc 17383750  T
Q  218 caaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttttacccgtccttatcttctattgagta-ttttacaaatcctattttg 316  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || ||| |||||||| ||||| ||||||| |||||||||||    
T  17383751 catacttcaaactcttaccattctaaaggtttgtttattatagttactaatttttacaggttcttctcttctatcgagtatttttacatatcctattttg 17383850  T
Q  317 tctc 320  Q
    ||||    
T  17383851 tctc 17383854  T

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Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 17377184 - 17377489
Alignment:
Q  22 tatctgtatttataagatgtgtgtattttcttttttgtgttgtgcctgtgcagatagaacgaaatctttccaataaacaaatcaatacaattgagaaaag 121  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| || |||| |||||    
T  17377184 tatctgtatgtataagatgtatgtattttcttttttgtgttgtgtctgtgcagatagaacgaagtctttccgataaagaaatcaattcatttgacaaaag 17377283  T
Q  122 acttcccgtgcttgaaaacttaagggaacttcaactaacttggt-tc---ggat--gcattcataactgggaggtggtagtgaaaatgctacagaattgt 215  Q
     |||||| || |||||||| |||    |||||||||| |||||| ||   | ||  || ||||| |||||||||||||| ||||||||||||||||||||    
T  17377284 ccttcccatgtttgaaaacataaccagacttcaactatcttggtctccaagcattagcgttcatgactgggaggtggtattgaaaatgctacagaattgt 17377383  T
Q  216 cccaaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttttacccgtccttatcttctattgagta-ttttacaaatcctattt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  17377384 cccaaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttatacccgttcttatcttctattgagtatttttacaaatcctattt 17377483  T
Q  315 tgtctc 320  Q
    ||||||    
T  17377484 tgtctc 17377489  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 17392453 - 17392558
Alignment:
Q  217 ccaaacttcaaactcttaccattgtaaaggtttgtttattatagttactaatttttacccgtccttatcttctattgagta--ttttacaaatcctattt 314  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| || ||| | ||||||| ||||  |||||||||||||||||    
T  17392453 ccaaacttcaaactcttaacattgcaaaggtttgttcattatagttactaatttttaccagttcttctattctattaagtattttttacaaatcctattt 17392552  T
Q  315 tgtctc 320  Q
    ||||||    
T  17392553 tgtctc 17392558  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 20111938 - 20112019
Alignment:
Q  172 gcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||| ||||||  | ||||||||||||||| ||||| ||||||||||||||| | ||||  |||||||||||||||||    
T  20111938 gcattcatgactggggtgaggtagtgaaaatgctccagaaatgtcccaaacttcaagcacttaaaattgtaaaggtttgttt 20112019  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 13712238 - 13712176
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||||||||||||| |  |||||||||||||||||||||   |||||||||||||||||    
T  13712238 ggtagtgaaaatgctacaaagctgtcccaaacttcaaactcttcgaattgtaaaggtttgttt 13712176  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 19653980 - 19653900
Alignment:
Q  173 cattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    ||||||||||||||| | |||  |||||||||||||  ||||||||||||||||| ||||||  |||  ||||||||||||    
T  19653980 cattcataactgggaagaggttatgaaaatgctacaatattgtcccaaacttcaagctcttaaaattaaaaaggtttgttt 19653900  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 19806905 - 19806967
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    ||||||||||||||| || |||||||||||||| ||||||||| | |||  ||||||||||||    
T  19806905 ggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt 19806967  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 1347995 - 1347935
Alignment:
Q  193 tagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||||||||  |||||||||| ||||||||||||||  |||||  ||||||||||||    
T  1347995 tagtgaaaatgctcgagaattgtcctaaacttcaaactctctccatttcaaaggtttgttt 1347935  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 17392345 - 17392381
Alignment:
Q  22 tatctgtatttataagatgtgtgtattttcttttttg 58  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17392345 tatctgtatttataagatgtatgtattttcttttttg 17392381  T

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Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 317
Target Start/End: Complemental strand, 26053196 - 26052902
Alignment:
Q  22 tatctgtatttataagatgtgtgtattttcttttttgtgttgtgcctgtgcagatagaacgaaatctttccaataaacaaatcaatacaattgagaaaag 121  Q
    ||||||||||||||||||||    ||||||||||||||| |||| || ||||||| |  | || ||||||||||||| |||||||| || |||| |||||    
T  26053196 tatctgtatttataagatgt----attttcttttttgtgatgtggctatgcagattgggcaaagtctttccaataaagaaatcaattcatttgacaaaag 26053101  T
Q  122 acttcccgtgcttgaaaacttaagggaacttcaactaacttggttcggatgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaa 221  Q
     |||||| || ||||||||||||  |||||| |||||  |||||    | |||||||| |||||||||| || |||||||||||||||||||||||||||    
T  26053100 ccttcccatgtttgaaaacttaaccgaacttgaactattttggtctcaaggcattcatgactgggaggtagtggtgaaaatgctacagaattgtcccaaa 26053001  T
Q  222 cttcaaactcttaccattgtaaaggtttgtttattatagttact--aatttttacccgtccttatcttctattgagta-ttttacaaatcctattttgt 317  Q
    |||||  |||||  ||||| ||||||||||||| ||||||||||  || ||| ||| || ||| |||||||||||||| ||||||||||||||||||||    
T  26053000 cttcactctctttacattgcaaaggtttgtttaatatagttactaaaaatttcaccagttcttctcttctattgagtatttttacaaatcctattttgt 26052902  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 15784656 - 15784718
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||  |||| |||||| |||||    
T  15784656 ggtagtgaaaatgctacagaattgtccaaaacttcaagctcttagaattgaaaaggtctgttt 15784718  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 40602 - 40666
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtttat 255  Q
    |||| |||||||||| ||||||||||| ||||||||||||||| | |||  ||||||||||||||    
T  40602 ggtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 40666  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 33992 - 34048
Alignment:
Q  199 aaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtttat 255  Q
    ||||||| ||| ||||||| ||||||||||||||| | |||  ||||||||||||||    
T  33992 aaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttat 34048  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 24912861 - 24912923
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgttt 253  Q
    |||||||||||||||  || |||||||||||||||||||||| |  |||  ||||||||||||    
T  24912861 ggtagtgaaaatgctttaggattgtcccaaacttcaaactctaaaaattcaaaaggtttgttt 24912923  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 32226559 - 32226620
Alignment:
Q  191 ggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtt 252  Q
    ||||||| ||||||| ||  ||||||||||||||||||||||| | |||  |||||||||||    
T  32226559 ggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt 32226620  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 32242111 - 32242030
Alignment:
Q  171 tgcattcataactgggaggtggtagtgaaaatgctacagaattgtcccaaacttcaaactcttaccattgtaaaggtttgtt 252  Q
    ||||||||||| ||| | | |||| || ||||||| ||  |||||||||| |||||||||||| | ||| ||||||||||||    
T  32242111 tgcattcataattggtatgaggtactgcaaatgctccattattgtcccaaccttcaaactctttcaattttaaaggtttgtt 32242030  T

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