View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3990_low_6 (Length: 312)
Name: NF3990_low_6
Description: NF3990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3990_low_6 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 3299 - 3594
Alignment:
| Q |
1 |
ttaatcccattttcccaacaacattaacaatcccttcattccaagaacagtcatatgttaaaggctgtcctttatctctctcaaatgaactcttcaatgg |
100 |
Q |
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| T |
3299 |
ttaatcccattttcccaacaacattaacaatcccttcattccaagaacagtcttatgttaaaggctgtcctttatctctctcaaatgaactcttcaatgg |
3398 |
T |
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| Q |
101 |
catagaaagtgcatgtagttcatcaaaacatggttctaatactaaactcgaccgtagccgatgttgtccagttcttgcagcatggttatactcttcatac |
200 |
Q |
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| T |
3399 |
catagaaagtgcatgtagttcatcaaaacatggttctaatagtaaactcgaccgtagccgatgttgtccgattcttgcagcatggttatactcttcatac |
3498 |
T |
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| Q |
201 |
tcctccactgcccttggaaaccattcatcttcgtcgtcgtcgtcatcaagatcatcatttgacatgcctttggtgccagatgactcagaaacatgt |
296 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3499 |
tcctccactgcccttggaaaccattcatcatcatcgtcgtcgtcatcaagatcatcatttgacatgcctttggtgccagatgactcagaaacatgt |
3594 |
T |
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