View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3990_low_7 (Length: 247)
Name: NF3990_low_7
Description: NF3990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3990_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 43064106 - 43064301
Alignment:
| Q |
33 |
attgatctttaagcaccaagtggtgcatgaggttgctctcatgcacccaccaaattaactacaatcaactgctgttcggcatttttgagatcggttgtga |
132 |
Q |
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| T |
43064106 |
attgatcgttaggcaccaagtggtgcatgaggttgctctcatgcacccaccaaa----ctacaattaactgttgttcagcatttttgagatcggttgcga |
43064201 |
T |
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| Q |
133 |
cactctttaaattggttcacccgatttaaaaagtgcatcaaaccgtagttaactaactttcaacttttcttgggta-ctacagaacaattgtagaataat |
231 |
Q |
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| T |
43064202 |
cactctttaaattggttcatccgatttaaaaagtgcatcaaacggtagttaattaactttcaactttttttgggtacctacagaacaattgtaaaataat |
43064301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 43182083 - 43181969
Alignment:
| Q |
93 |
acaatcaactgctgttcggcatttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtgcatcaaaccgtagttaactaacttt |
192 |
Q |
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| T |
43182083 |
acaattaactaccgttcgacatttttgagattggttgaaacattttttaaatcggttcatccgattttaaaagtgtgtcgaacggtagttaactaccgtt |
43181984 |
T |
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| Q |
193 |
caacttttcttgggt |
207 |
Q |
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| T |
43181983 |
taatttttcttgggt |
43181969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 31455350 - 31455402
Alignment:
| Q |
115 |
ttttgagatcggttgtgacactctttaaattggttcacccgatttaaaaagtg |
167 |
Q |
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| T |
31455350 |
ttttgagatcgattgagacaatttttaaatcggttcacccgatttaaaaagtg |
31455402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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