View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3991_high_1 (Length: 648)

Name: NF3991_high_1
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3991_high_1
NF3991_high_1
[»] chr1 (1 HSPs)
chr1 (9-648)||(5273730-5274372)


Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 9 - 648
Target Start/End: Complemental strand, 5274372 - 5273730
Alignment:
Q  9 agcaaaggttaatgaacttgttagtacaacatacaccacaaagagacaaagaccgttctccacggttgctatgtcggttttaaaaatacttataagaata 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274372 agcaaaggttaatgaacttgttagtacaacatacaccacaaagagacaaagaccgttctccacggttgctatgtcggttttaaaaatacttataagaata 5274273  T
Q  109 tttttcagattcatcccacgatgtat----acccaacctaattgtgacttcaaattttttattaacttaacacaattccttttaatttgtttattatata 204  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274272 tttttcagattcatcccacgatgtatgtatacccaacctaattgtgacttcaaattttttattaacttaacacaattccttttaatttgtttattatata 5274173  T
Q  205 catggagactcccacgttcgttgttcaaatttcataattaaacgcgcatgctaagctcgcactttttcttctaactcctaactatcactatcaccataat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274172 catggagactcccacgttcgttgttcaaatttcataattaaacgcgcatgctaagctcgcactttttcttctaactcctaactatcactatcaccataat 5274073  T
Q  305 ttaataaaaaatatttataattaatctaactaatgatcatctctcaatcattagacttagactccctacctcttgtttcaattctaaataagtgtaatta 404  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274072 t-aatcaaaaatatttataattaatctaactaatgatcatctctcaatcattagacttagactccctacctcttgtttcaattctaaataagtgtaatta 5273974  T
Q  405 acaatgtttaaattaaaaccatattgaagaattatattattgtaaattatcatatcataaactttggtcccatatgagttgtcgtttgctttgtatatgg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273973 acaatgtttaaattaaaaccatattgaagaattatattattgtaaattatcatatcataaactttggtcccatatgagttgtcgtttgctttgtatatgg 5273874  T
Q  505 tcactcagtggacttccctaagttttagttacatagaactaggacaaatccattacaataattacaattttaatatttctatttacatattaagtcaatg 604  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273873 ccactcagtggacttccctaagttttagttacatagaactaggacaaatccattacaataattacaattttaatatttctatttacatattaagtcaatg 5273774  T
Q  605 cttatactactaacatttttcttgtgattgagtataaatatgtc 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5273773 cttatactactaacatttttcttgtgattgagtataaatatgtc 5273730  T

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