View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3991_high_11 (Length: 363)
Name: NF3991_high_11
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 42689978 - 42689674
Alignment:
| Q |
1 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42689978 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcat |
42689879 |
T |
|
| Q |
101 |
tcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42689878 |
tcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgct |
42689779 |
T |
|
| Q |
201 |
aattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42689778 |
aattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagc |
42689679 |
T |
|
| Q |
301 |
tgctt |
305 |
Q |
| |
|
||||| |
|
|
| T |
42689678 |
tgctt |
42689674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 23946744 - 23947044
Alignment:
| Q |
5 |
gaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcag |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
23946744 |
gaatatgaatgacgtcatgtgctactcagattcacttcttgcagtcaatcttattatgaatgacactccgagatatcacacatacgccttcctcattcag |
23946843 |
T |
|
| Q |
105 |
aacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23946844 |
aacataaaggatttgcttagtgttcgaaatataactctccatcacactttaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaatt |
23946943 |
T |
|
| Q |
205 |
cagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagctgct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23946944 |
cagatgttcatcttgtcgtccaccaatcaccaccagctgacctcctccctctgcttagagctgatgctataggcactatctttattaggagatagctgct |
23947043 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
|
|
| T |
23947044 |
t |
23947044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 16781493 - 16781769
Alignment:
| Q |
3 |
ttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattc |
102 |
Q |
| |
|
||||| |||||||| | ||||||||||| |||||||| ||||| ||||||||||| |||||||| | |||||||| |||| ||||||||| ||||||| |
|
|
| T |
16781493 |
ttgaacatgaatgatcttatgtgctactcagattccctccttgctgttaatcttatcatgaatgata-tccgagattccacatctacgccgttctcattc |
16781591 |
T |
|
| Q |
103 |
agaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaa |
202 |
Q |
| |
|
||| || || || ||||| || ||| || ||| |||| |||||||| |||||||||||||| ||||||| ||||| |||||| || |||| |||||| |
|
|
| T |
16781592 |
-gaatattaaagacttgctagttgatcggaacatctctcttcatcacaccttaagagaggggaatcaatgtgtggattactttgctaaattggatgctaa |
16781690 |
T |
|
| Q |
203 |
ttcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcact |
281 |
Q |
| |
|
|| ||| | |||| ||||| ||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||| |
|
|
| T |
16781691 |
tttagacgctcattttgtcctccaccaatcgcctccagctgacctccttcctctgcttagaattgatgcgataggcact |
16781769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 12602548 - 12602493
Alignment:
| Q |
135 |
atcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaa |
190 |
Q |
| |
|
|||||||| |||||| |||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
12602548 |
atcactcttcatcactcattaagagaaggtaaccagtgcgcggatttctttgccaa |
12602493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 37145623 - 37145925
Alignment:
| Q |
3 |
ttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37145623 |
ttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattc |
37145722 |
T |
|
| Q |
103 |
agaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37145723 |
agaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaa |
37145822 |
T |
|
| Q |
203 |
ttcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagctg |
302 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37145823 |
ttcagaagttcatcttgtcgtccaccaattgccgccagctgacctcctccctctgcttagagatgatgctataggcactgtctttattaggagatagctg |
37145922 |
T |
|
| Q |
303 |
ctt |
305 |
Q |
| |
|
||| |
|
|
| T |
37145923 |
ctt |
37145925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 17716541 - 17716263
Alignment:
| Q |
3 |
ttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattc |
102 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| |||| ||| ||||| || |||| |
|
|
| T |
17716541 |
ttgaacatgaatgattttatgtgctactcggattctctccttgctgttaatctcatcatgaatgatacaccgagattccacatctatgccgttcttattc |
17716442 |
T |
|
| Q |
103 |
agaacataaaggatttgcttagt-gttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgcta |
201 |
Q |
| |
|
| ||||| || |||||||| ||| | ||| || ||| |||| |||||||| ||||||||||| || |||||||| |||| ||||| || |||||||| | |
|
|
| T |
17716441 |
aaaacattaaagatttgct-agtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgcagattattttgctaaattgggtgcca |
17716343 |
T |
|
| Q |
202 |
attcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcact |
281 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
17716342 |
tttcagatgctcagtttgttgtccaccaatcgcccccagctgacctccttcctatgcttagagctgatgcgataggcact |
17716263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 19017770 - 19017492
Alignment:
| Q |
3 |
ttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattc |
102 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| |||| ||| ||||| || |||| |
|
|
| T |
19017770 |
ttgaacatgaatgattttatgtgctactcggattctctccttgctgttaatctcatcatgaatgatacaccgagattccacatctatgccgttcttattc |
19017671 |
T |
|
| Q |
103 |
agaacataaaggatttgcttagt-gttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgcta |
201 |
Q |
| |
|
| ||||| || |||||||| ||| | ||| || ||| |||| |||||||| ||||||||||| || |||||||| |||| ||||| || |||||||| | |
|
|
| T |
19017670 |
aaaacattaaagatttgct-agtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgcagattattttgctaaattgggtgcca |
19017572 |
T |
|
| Q |
202 |
attcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcact |
281 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
19017571 |
tttcagatgctcagtttgttgtccaccaatcgcccccagctgacctccttcctatgcttagagctgatgcgataggcact |
19017492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 53606488 - 53606218
Alignment:
| Q |
1 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcat |
100 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||| |||| |||||||| || || |
|
|
| T |
53606488 |
atttgaatgtgaatgagataatgtgctactcggattcccttctagctgttaatcttattgcgaatgacactcctagataccacatctacgccgctcttat |
53606389 |
T |
|
| Q |
101 |
tcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgct |
200 |
Q |
| |
|
||||| || || || |||| | || | || || | ||||| ||||| |||||||||||||| ||||||||||| |||||||| || || |||||| |
|
|
| T |
53606388 |
ccagaatatcaaagacctgctaaatgacaggaacatttccctccaccacactttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgct |
53606289 |
T |
|
| Q |
201 |
aattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgc |
271 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
53606288 |
aattcagatgctgctcttgtcgtccatcaatcgcctccagctgatctcctccccttgcttagagctgatgc |
53606218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 53987074 - 53987133
Alignment:
| Q |
246 |
ctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagctgctt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53987074 |
ctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagctgctt |
53987133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 45211006 - 45210709
Alignment:
| Q |
5 |
gaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45211006 |
gaatatgaatgacgtcatgtgctactcggattcacttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcag |
45210907 |
T |
|
| Q |
105 |
aacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45210906 |
aacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaatt |
45210807 |
T |
|
| Q |
205 |
cagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagctg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45210806 |
cagatgttcatcttgtcgtccaccaatcaccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagttagctg |
45210709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 33805944 - 33806244
Alignment:
| Q |
5 |
gaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33805944 |
gaatatgaatgacgtcatgtgctactcggattcacttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcag |
33806043 |
T |
|
| Q |
105 |
aacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaatt |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806044 |
aacataaaggatttgcttaatgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaatt |
33806143 |
T |
|
| Q |
205 |
cagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagctgct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806144 |
cagatgttcatcttgtcgtccaccaatcaccgccagctgacctcctccctctgcttagagcggatgctataggcactgtctttattaggagatagctgct |
33806243 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
|
|
| T |
33806244 |
t |
33806244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 41 - 300
Target Start/End: Complemental strand, 30961316 - 30961056
Alignment:
| Q |
41 |
tcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatcact |
140 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||| | |||||| || ||| || |
|
|
| T |
30961316 |
tcttgctgttaatcttatcatgaatgataccccgagataccacacctacgccgtcctcatccagaatataaaggacttgctaattgttcggaacatctct |
30961217 |
T |
|
| Q |
141 |
ctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtcca-ccaatcgccgcca |
239 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| |||| |||| || || ||| ||||| ||| |
|
|
| T |
30961216 |
cttcatcacaccttaagagaggggaaccaatgtgtggatttctttgctaaattgggtgctaattcagatgctcattttgtagtgcacccattcgcctcca |
30961117 |
T |
|
| Q |
240 |
gctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagc |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| |||| ||||| ||||||| |||| |
|
|
| T |
30961116 |
gctgacctccttcctctgcttagagctgatgtgatagacactttctttgttaggagctagc |
30961056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 11240157 - 11240420
Alignment:
| Q |
14 |
tgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcagaacataaag |
113 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||| || |||| | |||||| || ||||||| |||| ||||| ||| |||||||| || || || |
|
|
| T |
11240157 |
tgacctcatgtgctactcggattccctgattgttgttcattttatcaagaatgataccccgagattccacatctacgtcgtgctcattcaaaatattaaa |
11240256 |
T |
|
| Q |
114 |
gatttgcttagt-gttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgtt |
212 |
Q |
| |
|
|| ||| ||||| | ||| || ||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| || || ||||||| ||||||| | |
|
|
| T |
11240257 |
gacttg-ttagttgatcggaacatctctctccatcacaccttaagagaggggaaccaatgtttggattactttgctaaattaggtgctagttcagattct |
11240355 |
T |
|
| Q |
213 |
catcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctatagg |
277 |
Q |
| |
|
||| | |||| ||||| ||||| | |||||||||| | ||||| |||||||||||||| ||||| |
|
|
| T |
11240356 |
catatgctcgttcaccattcgcctctagctgacctcattcctcttcttagagctgatgcgatagg |
11240420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 44567211 - 44567363
Alignment:
| Q |
139 |
ctctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcgccgcc |
238 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||| |||| |||| | || || |||||||||||| ||| ||||||| |||||||||||||| | || |
|
|
| T |
44567211 |
ctcttcatcacaccttaagagaggggaatgaatgtggagattactttactaaattaggtgctaattcatatgctcatcttatcgtccaccaatcgtctcc |
44567310 |
T |
|
| Q |
239 |
agctgacctcctccctctgcttagagctgatgctataggcactgtctttattag |
292 |
Q |
| |
|
|||| |||||| ||||| |||||||||| ||| |||| |||| ||||| |||| |
|
|
| T |
44567311 |
ggctgtcctccttcctcttcttagagctg-tgcgatagacactttctttgttag |
44567363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 721504 - 721808
Alignment:
| Q |
1 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
721504 |
atttgaatatgaatgacgtcatgtgctacttggattcccttcttgtagttaatcttattatgaatgacactccgagataccacacctacgccgtcctcat |
721603 |
T |
|
| Q |
101 |
tcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgct |
200 |
Q |
| |
|
|||||| |||||||||||||| | |||||| || || ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
721604 |
tcagaatataaaggatttgctaattgttcggaacttctctctccatcacacattaagagaggggagccaatgcgcggatttctttgctaagttgggtgct |
721703 |
T |
|
| Q |
201 |
aattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagc |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
721704 |
aattcagatgctcatcttgtcgtccaccaatcgcctccagctgacctcctccctctgcttagagctgatgccataggcactgtttttattaggagatagc |
721803 |
T |
|
| Q |
301 |
tgctt |
305 |
Q |
| |
|
||||| |
|
|
| T |
721804 |
tgctt |
721808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 38880728 - 38881031
Alignment:
| Q |
1 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
38880728 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactc-gagataccacacctacgtcgtcctcat |
38880826 |
T |
|
| Q |
101 |
tcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgct |
200 |
Q |
| |
|
|||||| |||||||||||||| | |||||| || ||| |||||||||||||||||||| || |||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
38880827 |
tcagaatataaaggatttgctaattgttcggaacatctctctccatcacacattaagatagaggaaccaatgcgcggatttctttgctaagttgggtgtt |
38880926 |
T |
|
| Q |
201 |
aattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcactgtctttattaggagatagc |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||| || |
|
|
| T |
38880927 |
aattcagatgctcatcttgtcgtccaccaatcgcctccagctgacctcctccctctgcttagaactgatgccatagacactgtttttattaggagattgc |
38881026 |
T |
|
| Q |
301 |
tgctt |
305 |
Q |
| |
|
||||| |
|
|
| T |
38881027 |
tgctt |
38881031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 46831386 - 46831656
Alignment:
| Q |
1 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcat |
100 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||| |||| |||||||| || || |
|
|
| T |
46831386 |
atttgaatgtgaatgagataatgtgctactcggattcccttctagctgttaatcttattgcgaatgacactcctagataccacatctacgccgctcttat |
46831485 |
T |
|
| Q |
101 |
tcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgct |
200 |
Q |
| |
|
||||| || || || |||| | || | || || | ||||| ||||| |||||||||||||| ||||||||||| |||||||| || || |||||| |
|
|
| T |
46831486 |
ccagaatatcaaagacctgctaaatgacaggaacatttccctccaccacactttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgct |
46831585 |
T |
|
| Q |
201 |
aattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgc |
271 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
46831586 |
aattcagatgctgctcttgtcgtccatcaatcgcctccagctgatctcctccccttgcttagagctgatgc |
46831656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 42604252 - 42604125
Alignment:
| Q |
154 |
taagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccc |
253 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||| || |||||||||| |||||||| ||| |||| |||||||||||||| |||||||||||||| || |
|
|
| T |
42604252 |
taagagagggaaatcaatgtgcggattactttgctaaattgggtgctatttcagatgctcagtttgttgtccaccaatcgcccccagctgacctccttcc |
42604153 |
T |
|
| Q |
254 |
tctgcttagagctgatgctataggcact |
281 |
Q |
| |
|
| |||||||||||||||| ||||||||| |
|
|
| T |
42604152 |
tatgcttagagctgatgcgataggcact |
42604125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 305
Target Start/End: Original strand, 48953549 - 48953806
Alignment:
| Q |
49 |
ttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatcactctccatca |
148 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||| |||||| || || || || || || ||||||||||| | || || ||| |||| ||||| |
|
|
| T |
48953549 |
ttaatcttatcatgaatgataccccgagatatcacatctacgcagttcttatccacaatatcaaggatttgctagctaaccggaacatctctcttcatca |
48953648 |
T |
|
| Q |
149 |
cacattaagagaggggaaccaatgtgcgga-tttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcgccgccagctgacct |
247 |
Q |
| |
|
||| ||||||||||||| ||| |||| | ||| ||||| || || | |||| |||||||| | ||||||||||||| |||||||| || |||| || |
|
|
| T |
48953649 |
cactctaagagaggggaatcaacgtgcaaactttttttgctaaattcgaagctatttcagatgctgatcttgtcgtccatcaatcgcctacaactgatct |
48953748 |
T |
|
| Q |
248 |
cctccctctgcttagagctgatgctataggcactgtctttattaggagatagctgctt |
305 |
Q |
| |
|
||| || |||||||||||||||||| ||||||| |||| ||||||| ||||||||| |
|
|
| T |
48953749 |
ccttcccctgcttagagctgatgctctaggcaccttcttcattaggaactagctgctt |
48953806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 1297672 - 1297402
Alignment:
| Q |
1 |
atttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcat |
100 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||| |||| ||||||||| || || |
|
|
| T |
1297672 |
atttgaatgtgaatgagataatgtgctactcggattcccttctagctgttaatcttattgcgaatgacactcctagataccacatctacgccgttcttat |
1297573 |
T |
|
| Q |
101 |
tcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgct |
200 |
Q |
| |
|
|||| || | || |||| | || ||| || || | ||||| ||||| |||||||| ||||| ||||||||||| |||| ||| || || |||||| |
|
|
| T |
1297572 |
cgagaatatcgaagacctgctaaatgatcggaacatttccctccaccacactttaagagaagggaatcaatgtgcggacttctctgctaaatttggtgct |
1297473 |
T |
|
| Q |
201 |
aattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgc |
271 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
1297472 |
aattcagatgttgatcttgtcgtccatcattcgcctccagctgatctcctccccatgcttagagctgatgc |
1297402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 302
Target Start/End: Original strand, 8639291 - 8639438
Alignment:
| Q |
155 |
aagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccct |
254 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||| || |||||||||| |||||||| |||| || |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
8639291 |
aagagaggggaatcaatgtgcagattactttgctaaattgggtgctagttcagatgctcattttatcgtccaccaatcgcctccagctgacctccttcct |
8639390 |
T |
|
| Q |
255 |
ctgcttagagctgatgctataggcactgtctttattaggagatagctg |
302 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| |||| || |||||| |
|
|
| T |
8639391 |
ctgcttagagctgatgcgataggcacttactttgttagaagctagctg |
8639438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 8684676 - 8684954
Alignment:
| Q |
3 |
ttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattc |
102 |
Q |
| |
|
||||| |||||||| | ||||||||||| ||||| || ||||| |||||||| || |||||||| || ||||||| |||| |||||| || || |||| |
|
|
| T |
8684676 |
ttgaacatgaatgattttatgtgctactcagattctctccttgctgttaatctcatcatgaatgatacaccgagattccacatctacgctgttcttattc |
8684775 |
T |
|
| Q |
103 |
agaacataaaggatttgcttagt-gttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgcta |
201 |
Q |
| |
|
| ||||| || |||||||| ||| | ||| ||| || |||| |||||||| ||||||||||| || |||||||| || ||||| || |||||||| | |
|
|
| T |
8684776 |
aaaacattaaagatttgct-agtcgatcggaatttctctcttcatcacaccttaagagagggaaatcaatgtgcaatttattttgctaaattgggtgcca |
8684874 |
T |
|
| Q |
202 |
attcagatgttcatcttgtcgtccaccaatcgccgccagctgacctcctccctctgcttagagctgatgctataggcact |
281 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||| ||| |||||||||| ||| |||||||||||||||| || |||||| |
|
|
| T |
8684875 |
tttcagatgctcagtttgttgtccaccaatcgcccccaactgacctccttcctatgcttagagctgatgcgatgggcact |
8684954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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