View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_high_20 (Length: 255)
Name: NF3991_high_20
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 40818522 - 40818298
Alignment:
| Q |
14 |
agagcttacagatacatacaaccatgactaagtcaatttcaacactgccaaaaacaacgccaatatatgcaccaacgtagacgacaaaatcaaattcgtt |
113 |
Q |
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| T |
40818522 |
agagcttacggatacatacaaccatgactaagtcaatttcaacactgccaaaaacaacgccaatatatgcaccaacgtagatgacagaatcaaattcgtt |
40818423 |
T |
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| Q |
114 |
aatcagagactaaccagcctaggagcgctgcaaaattagtt-ttttaatgcatgtattcgtcgaacctggatcctccacaaccggtttatatacgactat |
212 |
Q |
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| T |
40818422 |
aatcagagactaaccagcctaggagcgctgcaaaattagttttttttatgcatgtattcgacgaacctggatcctccacaactggtttatatatgactat |
40818323 |
T |
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| Q |
213 |
ttatgctaaaacaatatacgacatt |
237 |
Q |
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||||||||||||||||||||||||| |
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| T |
40818322 |
ttatgctaaaacaatatacgacatt |
40818298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 31750175 - 31750090
Alignment:
| Q |
24 |
gatacatacaaccatgactaagtcaatttcaacactgccaaaaacaacgccaatatatgcaccaacgtagacgacaaaatcaaatt |
109 |
Q |
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| T |
31750175 |
gatacatactgctatgactaagccaatttcaacactgccaaagacaacgcccatatacgcgctaatgcagacgaaaaaatcgaatt |
31750090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 38215737 - 38215780
Alignment:
| Q |
42 |
taagtcaatttcaacactgccaaaaacaacgccaatatatgcac |
85 |
Q |
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|||| ||||||||||||||||||||||||| |||| |||||||| |
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| T |
38215737 |
taagccaatttcaacactgccaaaaacaactccaaaatatgcac |
38215780 |
T |
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