View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_high_22 (Length: 250)
Name: NF3991_high_22
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 3897720 - 3897589
Alignment:
| Q |
11 |
cagagaaatcaatgagaaaattttcaacaaaagccttcacttaataaaccaataaaaattaaaattcaacttatgatgagaatgattcaaacataattgt |
110 |
Q |
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| T |
3897720 |
cagagaaatcaaggagaaaattttcaacaaaagccttcacttaataaaccaataaaaattaaaattcaacttatgatgagaacgattcaaacataattgt |
3897621 |
T |
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| Q |
111 |
atatatgaatcatttgatctcatttaccaata |
142 |
Q |
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| T |
3897620 |
atatatgaatcatttgctctcatttaccaata |
3897589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 3883852 - 3883722
Alignment:
| Q |
11 |
cagagaaatcaatgagaaaattttcaacaaaagccttcacttaataaaccaataaaaattaaaattcaacttatgatgagaatgattcaaacataattgt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
3883852 |
cagagaaatcaatgagaaaattttcaacaaaagccttgacataataaaccaataaaaattagaattcaacttatgatgagaacgattcaaacataattgt |
3883753 |
T |
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| Q |
111 |
atatatgaatcatttgatctcatttaccaat |
141 |
Q |
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| T |
3883752 |
atatatgaatcatttgatctcatttcccaat |
3883722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 3860100 - 3860053
Alignment:
| Q |
11 |
cagagaaatcaatgagaaaattttcaacaaaagccttcacttaataaa |
58 |
Q |
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| T |
3860100 |
cagagaaatcattaagaaaatattcaacaaaagccttgacttaataaa |
3860053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 16067979 - 16067848
Alignment:
| Q |
12 |
agagaaatcaatgagaaaattttcaacaaaagccttcacttaataaaccaataaaaattaaaattcaa---cttatgatgagaatgattcaaacataatt |
108 |
Q |
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|||||||| ||||| ||||| |||||||||| | || |||||||||||||||||||| ||||| |||| | ||||||| || |||||||||| |||| |
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| T |
16067979 |
agagaaatgaatgataaaatattcaacaaaaac-ttgacttaataaaccaataaaaaataaaaatcaaatcatgatgatgaaaacgattcaaacacaatt |
16067881 |
T |
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| Q |
109 |
gtatatatgaatcatttgatctcatttaccaat |
141 |
Q |
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||| |||||||||||||| |||||||| ||||| |
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| T |
16067880 |
gtagatatgaatcatttgctctcatttcccaat |
16067848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 16071258 - 16071125
Alignment:
| Q |
12 |
agagaaatcaatgagaaaattttcaacaaaagc-cttcacttaataaaccaataaaaattaaaattcaa---cttatgatgagaatgattcaaacataat |
107 |
Q |
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|||||||| ||||| ||||| |||||||||| | |||||||||||||||||||||||||||| | || | |||||||||| ||||||||| ||| |
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| T |
16071258 |
agagaaatgaatgataaaatattcaacaaaaaaacctcacttaataaaccaataaaaattaaaaattaaatcatgatgatgagaacaattcaaacacaat |
16071159 |
T |
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| Q |
108 |
tgtatatatgaatcatttgatctcatttaccaat |
141 |
Q |
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|||| |||||||| |||| |||||||| ||||| |
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| T |
16071158 |
tgtagatatgaataattttctctcatttcccaat |
16071125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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