View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3991_high_9 (Length: 393)
Name: NF3991_high_9
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_high_9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 11807101 - 11807477
Alignment:
| Q |
17 |
agatttttccttagcattttcagcttcctctatctccatacttcttatctttgcttccattccttcaagtttcttctcctcatatttatatggatttttc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11807101 |
agatttttccttagcattttcagcttcctctatctccatacttcttatcttagcttccattccttcaagtttcttctcctcatatttatatggatttttc |
11807200 |
T |
|
| Q |
117 |
tttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11807201 |
tttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcctct |
11807300 |
T |
|
| Q |
217 |
caattatggtattaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatattttgattttaaatcatgacatatagaacaacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11807301 |
caattatggtattaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatatttcgattttaaatcatgacatatagaacaacc |
11807400 |
T |
|
| Q |
317 |
tataattgaatcattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtcca |
393 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11807401 |
tataactgaatcattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtcca |
11807477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 393
Target Start/End: Complemental strand, 15284366 - 15284001
Alignment:
| Q |
28 |
tagcattttcagcttcctctatctccatacttcttatctttgcttccattccttcaagtttcttctcctcatatttatatggatttttctttgaacaagt |
127 |
Q |
| |
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|||||||||| ||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||| | |||||| | | ||||||||||||| |
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| T |
15284366 |
tagcattttccacttcctctatctcaacacttcttatcttagcatccattccttcaagtttcttctcctcatttccatatggctctctctttgaacaagt |
15284267 |
T |
|
| Q |
128 |
acctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcttctcaattatggta |
227 |
Q |
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||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |
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| T |
15284266 |
accacccttatcccaaccaccttcaaaatgagtaggtgagtatgttctcacaatcacatcaattttattccctttaaccattttcctctcaattatgcta |
15284167 |
T |
|
| Q |
228 |
ttaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatattttgattttaaatcatgacatatagaacaacctataattgaat |
327 |
Q |
| |
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||||||| | |||||||||||||||||||||||| |||||||||||||||| |||| || |||| || || |||||| || |||||||||||| ||||| |
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| T |
15284166 |
ttaagggtagtccttaaagcctttctcattggaatataaaatccaatatcactataattaaatttaaattcttgacatctaaaacaacctataactgaat |
15284067 |
T |
|
| Q |
328 |
cattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtcca |
393 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
15284066 |
caccttcatagtaaattgaaggaatgtccaaaaaccaatgaccaaatgacaaaacaatcaagtcca |
15284001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 72 - 268
Target Start/End: Original strand, 15287596 - 15287792
Alignment:
| Q |
72 |
tccattccttcaagtttcttctcctcatatttatatggatttttctttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatg |
171 |
Q |
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||||||||| ||| | |||||||||| | | |||| || || |||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
15287596 |
tccattcctccaactatcttctcctcttttctataaggcttagtctttgaacaagtaccagccttatcccaatcaccttcaaaatgagcaggtgaaaatg |
15287695 |
T |
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| Q |
172 |
ttctcacaatcacatcaatttcattccctttaaccattttcttctcaattatggtattaagggcaatccttaaagcctttctcattggaacataaaa |
268 |
Q |
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|| | ||||||||||| ||| ||| |||||| | | |||| |||||||||| ||||||||| | |||| ||||||||||| | |||||||||||| |
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| T |
15287696 |
ttttaacaatcacatctattctatttcctttagcaactttcctctcaattatactattaagggtagtcctcaaagcctttcttaatggaacataaaa |
15287792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 278
Target Start/End: Complemental strand, 15262787 - 15262624
Alignment:
| Q |
115 |
tctttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttctt |
214 |
Q |
| |
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|||||||||| || || ||||||||||| ||| |||||||||| ||||||||| ||| ||||||| || ||||| |||||| |||| | | |||| | |
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| T |
15262787 |
tctttgaacatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagttttcacaattactccaattccattccttttagcaactttcct |
15262688 |
T |
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| Q |
215 |
ctcaattatggtattaagggcaatccttaaagcctttctcattggaacataaaatccaatatca |
278 |
Q |
| |
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|||||||||| |||||| | |||||||||||||||| | |||||| ||||| || |||||| |
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| T |
15262687 |
ctcaattatgccattaagacaagtccttaaagcctttcttaatggaacgtaaaaaccgatatca |
15262624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 15265450 - 15265631
Alignment:
| Q |
72 |
tccattccttcaagtttcttctcctcatatttatatggatttttctttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatg |
171 |
Q |
| |
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||||||||||||| ||||||||| ||| | |||| || || | |||| ||||| ||| |||||||||||| ||||||||||||| || | ||||| |
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| T |
15265450 |
tccattccttcaactttcttctctccatttctataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatg |
15265549 |
T |
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| Q |
172 |
ttctcacaatcacatcaatttcattcccttta-accattttcttctcaattatggtattaagggcaatccttaaagcctttct |
253 |
Q |
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|| | ||||| |||| ||||||||| |||||| | | ||| | ||||||||| ||||||||| | |||||||||||||||| |
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| T |
15265550 |
ttgtaacaattacattaatttcattacctttatttcctcttc-tatcaattatgctattaagggtagtccttaaagcctttct |
15265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 391
Target Start/End: Original strand, 44248193 - 44248557
Alignment:
| Q |
27 |
ttagcattttcagcttcctctatctccatacttcttatctttgcttccattccttcaagtttcttctcctcatatttatatggatttttctttgaacaag |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||| | |||||||||| | |
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|
| T |
44248193 |
ttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatg |
44248292 |
T |
|
| Q |
127 |
tacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcttctcaattatggt |
226 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | || |||||||||||||||||| | |
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| T |
44248293 |
taccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgct |
44248392 |
T |
|
| Q |
227 |
attaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatattttgattttaaatcatgacatatagaacaacctataattgaa |
326 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| || |||| || ||||||||| || ||||||||||||||||| |
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| T |
44248393 |
attaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaaatttaaattcatgacatctaaaacaacctataattgaa |
44248492 |
T |
|
| Q |
327 |
tcattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtc |
391 |
Q |
| |
|
|| ||||||||||| |||||||| ||| ||||||||||||||||||||||| |||| |||| |
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|
| T |
44248493 |
ccaccctcatagtaaattgaaggaacatccgtaaaccaatgaccaaatgacaacacaatcgagtc |
44248557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 26 - 393
Target Start/End: Complemental strand, 51383553 - 51383189
Alignment:
| Q |
26 |
cttagcattttcagcttcctctatctccatacttcttatctttgcttccattccttcaagtttcttctcctcatatttatatggatttttctttgaacaa |
125 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||||||||||| ||| || |||||| | ||||||||||| |
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|
| T |
51383553 |
cttagcatttttcacttcctctatctcaatacttcttatctcagcatccatttcttcaagtttcttctccccattttcatatggctcactctttgaacaa |
51383454 |
T |
|
| Q |
126 |
gtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcttctcaattatgg |
225 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | || ||||||||||||| | |||| | |||||||| |
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|
| T |
51383453 |
gttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttcctttcaattatac |
51383354 |
T |
|
| Q |
226 |
tattaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattatattttgattttaaatcatgacatatagaacaacctataattga |
325 |
Q |
| |
|
||||||| | | ||||||||||||||||||| | |||||||| ||||||||| |||| || |||| | |||||||||| || ||||||||||||| || |
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|
| T |
51383353 |
tattaagagtagtccttaaagcctttctcatcgcaacataaattccaatatcggtatagttaaatttaagatcatgacatttaaaacaacctataataga |
51383254 |
T |
|
| Q |
326 |
atcattctcatagtaaactgaaggaatgtccaaaaaccaatgaccaaatgacaacataatcaagtcca |
393 |
Q |
| |
|
||| ||||||||||| |||||||| ||| |||||||||||||||||| |||| ||||||||||| |
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|
| T |
51383253 |
ctcaccctcatagtaaattgaaggaa---ccataaaccaatgaccaaatgataacacaatcaagtcca |
51383189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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