View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_10 (Length: 422)
Name: NF3991_low_10
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 323
Target Start/End: Complemental strand, 16683732 - 16683414
Alignment:
| Q |
6 |
agaagcaaaggggaacttaccaggaaatgaaaagaaacnnnnnnncaatgtagagtttttt-gtcttccttaaagcctaaaaacctgcaagagaataaac |
104 |
Q |
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| T |
16683732 |
agaatcaaagaggaacttaccaggaaatgaaaagaaacaaaaaaacaatgtagcgtttttttgtcttccttaaagcctaaaaacctgcaagagaataaac |
16683633 |
T |
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| Q |
105 |
atttgagtgagtataagtgtggaaaatccgtaattagtgacttaaaaaccgctagaaataaacaacattttttggacaaaaagattaatttaatgatgta |
204 |
Q |
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| T |
16683632 |
atgcgagtgagtataagtgtggaaaatccgtaattagtgacttaaaaaccgctagaaataaacaacattttttggacaaaaagattaatttaatgatgta |
16683533 |
T |
|
| Q |
205 |
agaataactagctagcgtgtgcaagaagatggaacaatgcgtaattcaacattcgattacattgcctatcgtaagatttaagaataaaaataaagaatat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16683532 |
agaataactagctagcgtgtgcaagaagatggaacaatgcgtaattcaacattcgattacattgcctatcgtaagatttaagaataaaaattaagaatat |
16683433 |
T |
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| Q |
305 |
gtacccttttctttctatg |
323 |
Q |
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||||||||||||||||||| |
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| T |
16683432 |
gtacccttttctttctatg |
16683414 |
T |
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