View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_15 (Length: 325)
Name: NF3991_low_15
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 3897291 - 3897005
Alignment:
| Q |
10 |
caatgagatgataaatttgaaggaattgaaattaagatttaaatgttgattttatgtaaagtcccaaaactactaaattccaaagaaacatataggagat |
109 |
Q |
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| T |
3897291 |
caatgagatgataaatttgaaggaattgaaattaaaattta-------------tgtaaagtcccaaaactaccaaattccaaagaaacatataggagat |
3897205 |
T |
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| Q |
110 |
gaaaagggaagnnnnnnnnctaatacggaaaattaaattgctttctatcacagtttatatcaacctttgtggtaggtacttcaataatcaaaaggaagaa |
209 |
Q |
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| T |
3897204 |
gaaaagggaagaaaaaaaactaatacggaaaattaaattgctttctatcacagtttatatcaacctttgtggtaggtacttcaataatcaaaaggaagaa |
3897105 |
T |
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| Q |
210 |
cacaaaatattggttgagatggagcttattttcagtttgagattcagaataaaagagataatgaataaataagtgagaaggagaatcaccatataatgat |
309 |
Q |
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| T |
3897104 |
cacaaaatattggtcgagatggagcttattttcagtttgagattcagaataaaagagataatgaataaataagtgagaaggagaatcaccatataatgat |
3897005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 3883490 - 3883208
Alignment:
| Q |
10 |
caatgagatgataaatttgaaggaattgaaattaagatttaaatgtt-gattttatgtaaagtcccaaaactactaaattccaaagaaacatataggaga |
108 |
Q |
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| T |
3883490 |
caatgagatgataaatttgaaggaattgaaatgaaaattgaaatgtttgattttatgtaaagtcccaaaaccactaaattccaaagaaagatatagaaga |
3883391 |
T |
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| Q |
109 |
tgaaaagggaagnnnnnnnnctaatacggaaaattaaattgctttctatcacagtttatatcaacctttgtggtaggtacttcaataatcaaaaggaaga |
208 |
Q |
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| T |
3883390 |
tataaaggaaagagaaaaaactaatacgaaaaattaaattgcttt-------------tatcaacctctgtggtt----cttcaataatcaaaaggaaga |
3883308 |
T |
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| Q |
209 |
acacaaaatattggttgagatggagcttattttcagtttgagattcagaataaaagagataatgaataaataagtgagaaggagaatcaccatataatga |
308 |
Q |
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| T |
3883307 |
acacgaaatatttgtcgagatggagcttatttttagtttgagattcagaatgaaagagataatgaagaaataaaggagaagga-attcaccatatgatga |
3883209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 3859889 - 3859618
Alignment:
| Q |
10 |
caatgagatgataaatttgaaggaattgaaattaagatttaaatgttgattttatgtaaagtcccaaaactactaaattccaaagaaacatataggagat |
109 |
Q |
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| T |
3859889 |
caatgtgatgataaatttgaaggaattgaaattaaaatttaaagaatgattgtatgtaaagtcccaaaactactaaattccaaagaatcgtatagaagat |
3859790 |
T |
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| Q |
110 |
gaaaagggaag--nnnnnnnnctaatacggaaaattaaattgctttctatcacagtttatatcaacctttgtggtaggtacttcaataatcaaaaggaag |
207 |
Q |
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| T |
3859789 |
gaaaagggaaggaaaaaaaaactagtacgaaaaaataaatttctatctatcacaggttttatcaacctttat----gattcttcaataatcaaaagga-- |
3859696 |
T |
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| Q |
208 |
aacacaaaatattggttgagatggagcttattttcagtttgagattcagaataaaagagataatgaataaataagtgagaaggagaat |
295 |
Q |
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| T |
3859695 |
---acaaaatattggtt-agatggagctt------agtttgagattcagaatgaaagagataaagaataaataagtgagaaggagaat |
3859618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 16078077 - 16078018
Alignment:
| Q |
56 |
tgattttatgtaaagtcccaaaactactaaattccaaagaaacatataggagatgaaaagg |
116 |
Q |
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| T |
16078077 |
tgattgtatgtaatgtcctaaaactactaaattccaaa-aaacatatagtagattaaaagg |
16078018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 16070617 - 16070553
Alignment:
| Q |
202 |
aggaagaacacaaaatattggttgagatggagcttattttcagtttgagattcagaataaaagag |
266 |
Q |
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| T |
16070617 |
aggaaggacactaaatatttgttgagatatagcttgtttttagtttgagatttagaatgaaagag |
16070553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 16078004 - 16077960
Alignment:
| Q |
136 |
ggaaaattaaattgctttctatcacagtttatatcaacctttgtg |
180 |
Q |
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| T |
16078004 |
ggaaaaataaattgctttctatcacaatttctctcaacctttgtg |
16077960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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