View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_16 (Length: 324)
Name: NF3991_low_16
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 36639749 - 36639448
Alignment:
| Q |
17 |
attttgttgtcgaaaatcacctggttgcaggtgctgccatatgcaaaatctatcttaaaaaatatgatatcaaaagttaataaagaactataaaaagtag |
116 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639749 |
atttggttgtcgaaaattacctggttgcaggtgctgccatatgcaaaatctatcttaaaaaatatgatatcaaaagttaataaagaactataaaaagtag |
36639650 |
T |
|
| Q |
117 |
aaaggatatgatatgattttatattattat---gatttgatttggaatgtcaaataaagataggaggagcatcaatatatacgtcatgtttcctttctga |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639649 |
aaaggatatgatatgattttatattattattatgatttgatttggaatgtcaaataaagataggaggagcatcaatatatacgtcatgtttcctttctga |
36639550 |
T |
|
| Q |
214 |
gtctctacaacttttttggggatgtggccatatctgattctctctgtcgcataatctgcttacatgatttcacttttgtatattccaatttgtaagaatt |
313 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639549 |
gtctatacaacttttttggggatgtggccatatctgattctctctgtcgcataatctgcttacatgatttcacttttgtatattccaatttgtaagaatt |
36639450 |
T |
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| Q |
314 |
at |
315 |
Q |
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|| |
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| T |
36639449 |
at |
36639448 |
T |
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