View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_17 (Length: 303)
Name: NF3991_low_17
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 11625968 - 11625692
Alignment:
| Q |
11 |
cagagaacccttgttagacttttagcccgttactactctcgattaagagactgaatta-tcaaggaaattacactcgatgaaataataaaattatctttg |
109 |
Q |
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| T |
11625968 |
cagagaacccttgttagacttttagccagttactactctcgattaagagagtgaattaatcaaggaaattacactcgatgaaataataaaattatctttg |
11625869 |
T |
|
| Q |
110 |
atggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggtttc |
209 |
Q |
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| T |
11625868 |
atggtaaagatacaaaagtcaccatcaaaaatctttgtcgcatcagatctccaacagatgcactgacggtgcatctagttgttgcctgactcatggtttc |
11625769 |
T |
|
| Q |
210 |
aagcttttggttacatgggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagcttttgtaac |
286 |
Q |
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| T |
11625768 |
aagcttttggttacatgggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagtttttgtaac |
11625692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 31050051 - 31049947
Alignment:
| Q |
109 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactgacggtgcatctagttggtgcctgactcatggttt |
208 |
Q |
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| T |
31050051 |
gatggtaaagatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcattaatagagaatctagttgttgtttgactcatcgttt |
31049952 |
T |
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| Q |
209 |
caagc |
213 |
Q |
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| T |
31049951 |
caagc |
31049947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 31040035 - 31039971
Alignment:
| Q |
109 |
gatggtaaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcact |
173 |
Q |
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| T |
31040035 |
gatggtaaacatatagaagtcaccatcaacattctttgaatcatcagatctccaacagatgcact |
31039971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 21185285 - 21185321
Alignment:
| Q |
68 |
atcaaggaaattacactcgatgaaataataaaattat |
104 |
Q |
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| T |
21185285 |
atcaaggaaatcacactcgatgaaataataaaattat |
21185321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 31046195 - 31046135
Alignment:
| Q |
115 |
aaagatacaaaagtcaccatcaaaaatctttgtagcatcagatctccaacagatgcactga |
175 |
Q |
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||||||| | ||||||| |||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
31046195 |
aaagatatagaagtcacaatcaaagatatttgtagcatcagatctacaacatatgcactga |
31046135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 31015639 - 31015595
Alignment:
| Q |
121 |
acaaaagtcaccatcaaaaatctttgtagcatcagatctccaaca |
165 |
Q |
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| T |
31015639 |
acaaaagtcaccttcatcgatctttgtagcatcagatctccaaca |
31015595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 98
Target Start/End: Original strand, 50968789 - 50968819
Alignment:
| Q |
68 |
atcaaggaaattacactcgatgaaataataa |
98 |
Q |
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| T |
50968789 |
atcaaggaaattacactcgatgaaataataa |
50968819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 98
Target Start/End: Original strand, 50970901 - 50970931
Alignment:
| Q |
68 |
atcaaggaaattacactcgatgaaataataa |
98 |
Q |
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| T |
50970901 |
atcaaggaaattacactcgatgaaataataa |
50970931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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