View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_19 (Length: 280)
Name: NF3991_low_19
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 7039994 - 7039733
Alignment:
| Q |
1 |
atctcttaaacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactgaaaagatataatggtagacgattaagca |
100 |
Q |
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| T |
7039994 |
atctcttaaacacaactcatttctggaatctacattaatgtactctcctttacaatttctctgcagtgactgaaaagatataatggtagacgattaagca |
7039895 |
T |
|
| Q |
101 |
taataacatcatccattaaattcaagtacaaaaacatcattgtagagttcattagagatatgatacattaagtttaaaatatcttcaaaaatatctacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7039894 |
taataacatcatccattaaattcaagtacaaaaacatcattgtagagttcattagagatatgatacattaagtttaaaatatcttcaaaaatatatacgt |
7039795 |
T |
|
| Q |
201 |
tgtgagatatgattccatgcatttacatcgacaatataacaaattaaattggtaataatatt |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7039794 |
tgtgagatatgattccatgcatttacatcgacaatataacagattaaattggtaataatatt |
7039733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7027727 - 7027596
Alignment:
| Q |
1 |
atctcttaaacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactgaaaagatataatggtagacgattaagca |
100 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||||| |
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| T |
7027727 |
atctcttaaacacaactcatttctgtaatctacatcaatgtactctcctttacaatttctttgcaatgactgaaaagataaaatggtagaccattaagca |
7027628 |
T |
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| Q |
101 |
taataacatcatccattaaattcaagtacaaa |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7027627 |
taataacatcatccattaaattcaagtacaaa |
7027596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 7047438 - 7047298
Alignment:
| Q |
1 |
atctcttaaacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactgaaaagatataatggtagacgattaagca |
100 |
Q |
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||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
7047438 |
atctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgactgaaaagatataatgatagaccattaagca |
7047339 |
T |
|
| Q |
101 |
taataacatcatccattaaattcaagtacaaaaacatcatt |
141 |
Q |
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||||||||||| | |||||||||||| |||| |||||||| |
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| T |
7047338 |
taataacatcactctttaaattcaagttcaaacacatcatt |
7047298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 7004659 - 7004523
Alignment:
| Q |
1 |
atctcttaaacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactgaaaagatataatggtagacgattaagca |
100 |
Q |
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|
||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
7004659 |
atctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgactgaaaagatataatgatagaccattaagca |
7004560 |
T |
|
| Q |
101 |
taataacatcatccattaaattcaagtacaaaaacat |
137 |
Q |
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||||||||||| | |||||||||||| |||| |||| |
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| T |
7004559 |
taataacatcactctttaaattcaagttcaaacacat |
7004523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 7014306 - 7014167
Alignment:
| Q |
1 |
atctcttaaacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactgaaaagatataatggtagacgattaagca |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
7014306 |
atctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgactgaaaatatataatggtagaccattaagca |
7014207 |
T |
|
| Q |
101 |
taataacatcatccattaaattcaagtacaaaaacatcat |
140 |
Q |
| |
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||||||||||| |||||||||||| |||| ||||||| |
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| T |
7014206 |
taataacatcaaaatttaaattcaagttcaaacacatcat |
7014167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 7056276 - 7056137
Alignment:
| Q |
1 |
atctcttaaacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactgaaaagatataatggtagacgattaagca |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||| | ||||| |||||||| |
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| T |
7056276 |
atctcctaaacacaactcatttctggaatctacatcaatatactctcctttacaacttctctgcagtgactgaatagatatagtagtagatcattaagca |
7056177 |
T |
|
| Q |
101 |
taataacatcatccattaaattcaagtacaaaaacatcat |
140 |
Q |
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||||| |||||| ||||||||||||||| ||| ||||||| |
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| T |
7056176 |
taatagcatcattcattaaattcaagtagaaacacatcat |
7056137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6994789 - 6994718
Alignment:
| Q |
1 |
atctcttaaacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactg |
72 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
6994789 |
atctcttaaacacaactcatttctggaatctacatcaacatactctcctttacaatttctctgcagtgactg |
6994718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 7020502 - 7020414
Alignment:
| Q |
175 |
taaaatatcttcaaaaatatctacgttgtgagatatgattccatgcatttacatcgacaatata-acaaattaaattggtaataatatt |
262 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||| |
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| T |
7020502 |
taaaatatcttcacaaatatctacaatgtgatatatgattccatgcatttacaccgataatatatacatattaaattggtaataatatt |
7020414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 7020710 - 7020647
Alignment:
| Q |
9 |
aacacaactcatttctgaaatctacattaatgtactctcctttacaatttctctgcagtgactg |
72 |
Q |
| |
|
|||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
7020710 |
aacacaactcatttttggaatctacatgaatatactctcctttacaatttctctgcagtgactg |
7020647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 7027432 - 7027360
Alignment:
| Q |
188 |
aaaatatctacgttgtgagatatgattccatgcatttacatcgacaatat-aacaaattaaattggtaataat |
259 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||| |||||| || ||||| ||||||||||||||| |
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|
| T |
7027432 |
aaaatatctacattgtgacatatgattcgatgcatttacaacgacaaaatgtacaaactaaattggtaataat |
7027360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 7047189 - 7047116
Alignment:
| Q |
189 |
aaatatctacgttgtgagatatgattccatgcatttacatcgacaatat-aacaaattaaattggtaataatat |
261 |
Q |
| |
|
|||||||||| | |||| ||||||||| ||||||||||| |||||| || ||||| ||||||||||||||||| |
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|
| T |
7047189 |
aaatatctacatggtgacatatgattcgatgcatttacaccgacaaaatgtacaaactaaattggtaataatat |
7047116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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