View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_21 (Length: 278)
Name: NF3991_low_21
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 44763779 - 44763542
Alignment:
| Q |
18 |
aatagcatactctgattctggaagtgataaaacacattgtgaaatattgcatagtcgaatagttcaacaagtagatagatgcagtactcatagtcctcat |
117 |
Q |
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| T |
44763779 |
aataacatactctgattctggaagtgataaaacacattgtgaaatattgcatagtcgaata-----acaagtagatagatgcagtactcataatcctcat |
44763685 |
T |
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| Q |
118 |
gaataatggtcacaatcttcactttagcacactcaaactcacgcttgcatttaaaggttggaaaaacctcaggataattgtcacaccaaactactgatcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44763684 |
gaataatggtcacaatcttcactttagcacactcaaactcacgcttgcatttaaaggttggaaaaacctcaggataattgtcacaccaaactactgatcg |
44763585 |
T |
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| Q |
218 |
tgtctctaaacctttgtaaatcttccaccaaattgaataatga |
260 |
Q |
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| T |
44763584 |
tgtctctaaacctttgtaaatcttccaccaaattgaataatga |
44763542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 23407847 - 23407614
Alignment:
| Q |
26 |
actctgattctg-gaagtgataaaacacattgtgaaatattgcatagtcgaatagttcaacaagtagatagatgcagtactcatagtcctcatgaataat |
124 |
Q |
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| T |
23407847 |
actctgattcttagaagtggtaaaacacattgtgaaacattgcatagggaaatagctcaataagtagataggtgaagtactcataatcctcattaataat |
23407748 |
T |
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| Q |
125 |
ggtcacaatcttcactttagcacactcaaactcacgcttgcatttaaaggttggaaaaacctcaggataattgtcacaccaaactactgatcgtgtctct |
224 |
Q |
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| T |
23407747 |
ggtcacaatcttcactctagcacactcgaactcaagcttgcatttataggttggaaaaacctcatgataattgtcacaccaaatgactgattgtgtctct |
23407648 |
T |
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| Q |
225 |
aaacctttgtaaatcttccaccaaattgaataat |
258 |
Q |
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| T |
23407647 |
aaacctttgtaaatcttccaacaaatagaataat |
23407614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 366859 - 366963
Alignment:
| Q |
154 |
actcacgcttgcatttaaaggttggaaaaacctcaggataattgtcacaccaaactactgatcgtgtctctaaacctttgtaaatcttccaccaaattga |
253 |
Q |
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||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||||||| |||||||| |
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| T |
366859 |
actcaagcttgcatttacaggttggaaaaacctcttgataattgtcacaccaaactattgaccgtgtctcagaacctttgtagatcttcctacaaattga |
366958 |
T |
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| Q |
254 |
ataat |
258 |
Q |
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||||| |
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| T |
366959 |
ataat |
366963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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