View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3991_low_24 (Length: 250)
Name: NF3991_low_24
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_24 |
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| [»] chr4 (10 HSPs) |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 30220075 - 30220315
Alignment:
| Q |
10 |
gcaaagggttgaagtgaagcttgaagagcacgtaaagattcctaaatttcctgaaaccacaaactcatcatcaatattatatgataattatcttagtgac |
109 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30220075 |
gcaaagggttgaagtgaagcttgaagagcacataaagattcctaaatttcctgaaaccacaaactcatcatcaatattatatgataattatcttagtgac |
30220174 |
T |
|
| Q |
110 |
tatgtaacaagtattctaacttcaagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30220175 |
tatgtaacaagtattctaacttcaagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttga |
30220274 |
T |
|
| Q |
210 |
tattcaaacttcaccatgcacttggtgatggttactctctc |
250 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
30220275 |
tattcaaacttcaccatgcacttggtgatggttactctctc |
30220315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 30048853 - 30048610
Alignment:
| Q |
10 |
gcaaagggttgaagtgaagcttgaagagcacgtaaagattcctaaatttcctgaaaccacaaactcatcatcaat---attatatgataattatcttagt |
106 |
Q |
| |
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||||| ||| |||||||||| |||||| ||| |||||||||| | |||||||||||||| ||| ||||||||| ||||||||| |||||||||||| |
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| T |
30048853 |
gcaaaaggtcgaagtgaagcctgaagaacacttaaagattcccatatttcctgaaaccataaattcatcatcatgtgaattatatgacaattatcttagt |
30048754 |
T |
|
| Q |
107 |
gactatgtaacaagtattctaacttcaagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactt |
206 |
Q |
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||||||||||||||||||||| || || |||||| ||||||||||| ||||||||||||||| | || || |||||||||| ||||||| | || |
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| T |
30048753 |
gactatgtaacaagtattctagctaaaaaaacaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcacca |
30048654 |
T |
|
| Q |
207 |
tgatattcaaacttcaccatgcacttggtgatggttactctctc |
250 |
Q |
| |
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| |||||||||||||| |||| |||||||||||||||||||||| |
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| T |
30048653 |
taatattcaaacttcatcatggacttggtgatggttactctctc |
30048610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 30063194 - 30062951
Alignment:
| Q |
10 |
gcaaagggttgaagtgaagcttgaagagcacgtaaagattcctaaatttcctgaaaccacaaactcatcatcaat---attatatgataattatcttagt |
106 |
Q |
| |
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||||| ||| |||||||||| |||||| ||| |||||||||| | |||||||||||||| ||| ||||||||| ||||||||| |||||||||||| |
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| T |
30063194 |
gcaaaaggtcgaagtgaagcctgaagaacacttaaagattcccatatttcctgaaaccataaattcatcatcatgtgaattatatgacaattatcttagt |
30063095 |
T |
|
| Q |
107 |
gactatgtaacaagtattctaacttcaagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactt |
206 |
Q |
| |
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||||||||||||||||||||| || || |||||| ||||||||||| ||||||||||||||| | || || |||||||||| ||||||| | || |
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| T |
30063094 |
gactatgtaacaagtattctagctaaaaaaacaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcacca |
30062995 |
T |
|
| Q |
207 |
tgatattcaaacttcaccatgcacttggtgatggttactctctc |
250 |
Q |
| |
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| |||||||||||||| |||| |||||||||||||||||||||| |
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| T |
30062994 |
taatattcaaacttcatcatggacttggtgatggttactctctc |
30062951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 30280766 - 30280883
Alignment:
| Q |
133 |
aagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcactt |
232 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30280766 |
aagaacaccacaagacaaaccactttgggaaatgcatttaattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcactt |
30280865 |
T |
|
| Q |
233 |
ggtgatggttactctctc |
250 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
30280866 |
ggtgatggttactctctc |
30280883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 30304490 - 30304373
Alignment:
| Q |
133 |
aagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcactt |
232 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304490 |
aagaacaccacaagacaaaccactttgggaaatgcatttaattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcactt |
30304391 |
T |
|
| Q |
233 |
ggtgatggttactctctc |
250 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
30304390 |
ggtgatggttactctctc |
30304373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 30271423 - 30271306
Alignment:
| Q |
133 |
aagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcactt |
232 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30271423 |
aagaacaccacaagacaaaccactttgggaaatacatttaattaaatatccaacaagaaatgctaaaggaactttgatattcaaacttcaccatgcactt |
30271324 |
T |
|
| Q |
233 |
ggtgatggttactctctc |
250 |
Q |
| |
|
|||||||||||||||||| |
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| T |
30271323 |
ggtgatggttactctctc |
30271306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 30228992 - 30228749
Alignment:
| Q |
10 |
gcaaagggttgaagtgaagcttgaagagcacgtaaagattcctaaatttcctgaaaccacaaactcatcatcaat---attatatgataattatcttagt |
106 |
Q |
| |
|
||||| |||||||||||||| |||||| ||| |||||||||| | |||||||||||||| ||| ||||||||| ||||||||| || ||| ||||| |
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|
| T |
30228992 |
gcaaaaggttgaagtgaagcctgaagaacacttaaagattcccatatttcctgaaaccataaattcatcatcatgtgaattatatgacaaatatgttagt |
30228893 |
T |
|
| Q |
107 |
gactatgtaacaagtattctaacttcaagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactt |
206 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||| ||||||| ||||||||||||||| | || || |||||||||| ||||||| | || |
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|
| T |
30228892 |
aactatgtaacaagtattctaaatggaagaacaccacaaaataaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcacca |
30228793 |
T |
|
| Q |
207 |
tgatattcaaacttcaccatgcacttggtgatggttactctctc |
250 |
Q |
| |
|
| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
30228792 |
taatattcaaacttaatcatgcacttggtgatggttactctctc |
30228749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 30032597 - 30032364
Alignment:
| Q |
20 |
gaagtgaagcttgaagagcacgtaaagattcctaaatttcctgaaaccacaaactcatcatcaat---attatatgataattatcttagtgactatgtaa |
116 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||| | |||||||||||||| ||| ||||||||| ||||||||| |||||| ||| ||||||||||| |
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|
| T |
30032597 |
gaagtgaagcctgaagaacacttaaagattcccatatttcctgaaaccataaattcatcatcatgtgaattatatgacaattattttaatgactatgtaa |
30032498 |
T |
|
| Q |
117 |
caagtattctaacttcaagaacacctcaagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaa |
216 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||| ||||||||||||||| | || || |||||||||| ||||| | || | |||||||| |
|
|
| T |
30032497 |
caagtattctagctgaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaa |
30032398 |
T |
|
| Q |
217 |
acttcaccatgcacttggtgatggttactctctc |
250 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| |
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|
| T |
30032397 |
acttcatcatgcacttggtgacggttactctctc |
30032364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 30264518 - 30264412
Alignment:
| Q |
144 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta |
243 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30264518 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggtta |
30264419 |
T |
|
| Q |
244 |
ctctctc |
250 |
Q |
| |
|
||||||| |
|
|
| T |
30264418 |
ctctctc |
30264412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 30287670 - 30287776
Alignment:
| Q |
144 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtta |
243 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30287670 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatggtta |
30287769 |
T |
|
| Q |
244 |
ctctctc |
250 |
Q |
| |
|
||||||| |
|
|
| T |
30287770 |
ctctctc |
30287776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 72627 - 72521
Alignment:
| Q |
143 |
caagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtt |
242 |
Q |
| |
|
||||||| ||| || |||||||||||| | |||||||||||||||| ||||| || || || ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
72627 |
caagatagaccactatgggaaattcatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggtt |
72528 |
T |
|
| Q |
243 |
actctct |
249 |
Q |
| |
|
||||||| |
|
|
| T |
72527 |
actctct |
72521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 79691 - 79585
Alignment:
| Q |
143 |
caagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgctaaaggaactttgatattcaaacttcaccatgcacttggtgatggtt |
242 |
Q |
| |
|
||||||| ||| |||||||| || ||| | |||||||||||||||| ||||| || || || ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
79691 |
caagatagaccactttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttggagatggtt |
79592 |
T |
|
| Q |
243 |
actctct |
249 |
Q |
| |
|
||||||| |
|
|
| T |
79591 |
actctct |
79585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 2311384 - 2311424
Alignment:
| Q |
209 |
atattcaaacttcaccatgcacttggtgatggttactctct |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2311384 |
atattcaaacttcaccatgcacttggagatggttattctct |
2311424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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