View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_26 (Length: 248)
Name: NF3991_low_26
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 1350216 - 1349994
Alignment:
| Q |
13 |
aatatactcaaataaactaaaatagtaggcatgttttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttga |
112 |
Q |
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| T |
1350216 |
aatatactcaaataaactaaaatagtaggcatgttttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttga |
1350117 |
T |
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| Q |
113 |
cctttgtaactgggaagccagccatggacttaagtccaacgaatggagccaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350116 |
cctttgtaactgggaagccagccatggacttaagtccaacgaatggagctaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctga |
1350017 |
T |
|
| Q |
213 |
agaggacatcatagaggaagcca |
235 |
Q |
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||||||||||||||||||||||| |
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| T |
1350016 |
agaggacatcatagaggaagcca |
1349994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 1373509 - 1373292
Alignment:
| Q |
18 |
actcaaataaactaaaatagtaggcatgttttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgaccttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373509 |
actcaaataaactaaaatagtaggcatgttttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgaccttt |
1373410 |
T |
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| Q |
118 |
gtaactgggaagccagccatggacttaagtccaacgaatggagccaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctgaagagg |
217 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
1373409 |
gtaattgggaagccagccatggacttgagtccgacgaatggagccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagagg |
1373310 |
T |
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| Q |
218 |
acatcatagaggaagcca |
235 |
Q |
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|||||||||||||||||| |
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| T |
1373309 |
acatcatagaggaagcca |
1373292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 1358163 - 1357949
Alignment:
| Q |
23 |
aataaactaaaatagtaggcatgtt--ttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgacctttgta |
120 |
Q |
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|||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
1358163 |
aataaactaaaatagtaggcctattatttttctcacctgcatgcagtttactcttccaccattgcttgtaatagaggtaatgtccttgttgacctttgta |
1358064 |
T |
|
| Q |
121 |
actgggaagccagccatggacttaagtccaacgaatggagccaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctgaagaggaca |
220 |
Q |
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| T |
1358063 |
actgggaagccagccatggacttgagtccaacgaatggagccaccgcgccggattgtaccgaagaggcgcggttaactgtagtcatagctgaagaggaaa |
1357964 |
T |
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| Q |
221 |
tcatagaggaagcca |
235 |
Q |
| |
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||||||||||||||| |
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| T |
1357963 |
tcatagaggaagcca |
1357949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 1383755 - 1383568
Alignment:
| Q |
48 |
ttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgacctttgtaactgggaagccagccatggacttaagt |
147 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
1383755 |
ttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttgtaactgggaagccagccatggacttgagt |
1383656 |
T |
|
| Q |
148 |
ccaacgaatggagccaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctgaagaggacatcatagaggaagcca |
235 |
Q |
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|| ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383655 |
ccgacgaatggagccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatagaggaagcca |
1383568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 1389860 - 1389673
Alignment:
| Q |
48 |
ttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgacctttgtaactgggaagccagccatggacttaagt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
1389860 |
ttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttgtaactgggaagccagccatggacttgagt |
1389761 |
T |
|
| Q |
148 |
ccaacgaatggagccaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctgaagaggacatcatagaggaagcca |
235 |
Q |
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|| ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389760 |
ccgacgaatggagccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatagaggaagcca |
1389673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 1393791 - 1393605
Alignment:
| Q |
49 |
tttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgacctttgtaactgggaagccagccatggacttaagtc |
148 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
1393791 |
tttctcacctgcatgcagtttactcttccaccattgcttgtaatggaggtaatgtctttgttgacctttgtaattgggaagccagccatggacttgagtc |
1393692 |
T |
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| Q |
149 |
caacgaatggagccaccgcgccggattgtaccgaagagacgcggttaactgtagtcacagctgaagaggacatcatagaggaagcca |
235 |
Q |
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| ||||||||||||||||| ||||||||||||| |||| | |||||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
1393691 |
cgacgaatggagccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatagaggaagcca |
1393605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 7006402 - 7006346
Alignment:
| Q |
55 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
111 |
Q |
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|||||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||| |
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|
| T |
7006402 |
acctgcatacagttcactcttccaccattgcttgtgatggaggtaatgtcattgttg |
7006346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 7009483 - 7009427
Alignment:
| Q |
55 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
111 |
Q |
| |
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|||||||| ||||| |||||||| |||||||||| ||||||||||||||| |||||| |
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|
| T |
7009483 |
acctgcatacagttcactcttccaccattgcttgcaatggaggtaatgtcattgttg |
7009427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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