View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3991_low_27 (Length: 236)

Name: NF3991_low_27
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3991_low_27
NF3991_low_27
[»] chr4 (10 HSPs)
chr4 (1-221)||(30220295-30220515)
chr4 (1-221)||(30048407-30048630)
chr4 (1-221)||(30062748-30062971)
chr4 (1-221)||(30228546-30228769)
chr4 (1-221)||(30032161-30032384)
chr4 (1-89)||(30271238-30271326)
chr4 (1-89)||(30280863-30280951)
chr4 (1-89)||(30304305-30304393)
chr4 (1-84)||(30264349-30264432)
chr4 (1-84)||(30287756-30287839)
[»] chr7 (1 HSPs)
chr7 (1-86)||(2311405-2311490)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-71)||(79534-79604)
scaffold0024 (1-71)||(72470-72540)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30220295 - 30220515
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcacgaccacaattaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30220295 cttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttccttcacgaccacaattaa 30220394  T
Q  101 attcaaaatatgcaaagaaaggtttgtttaagaagttatgtttagatatctcatccttttttagctccatatcagattttggatcaagcttaatcaagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30220395 attcaaaatatgcaaagaaaggtttgtttaagaagttatgtttagatatctcatccttttttagctccatatcagattttggatcaagcttaatcaagac 30220494  T
Q  201 aagaatgattgaagatgacaa 221  Q
    |||||||||||||||||||||    
T  30220495 aagaatgattgaagatgacaa 30220515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30048630 - 30048407
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcac---gaccacaat 97  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  30048630 cttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttccttcaaaaagaccacaat 30048531  T
Q  98 taaattcaaaatatgcaaagaaaggtttgtttaagaagttatgtttagatatctcatccttttttagctccatatcagattttggatcaagcttaatcaa 197  Q
    || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||    
T  30048530 tagattcaaaatatgcaaagaaaagtttgtttaagaagttatgtatagatatctcatccttttttagctccatatcagattttggatcaagcatattgaa 30048431  T
Q  198 gacaagaatgattgaagatgacaa 221  Q
    ||||| ||||||||||||||||||    
T  30048430 gacaacaatgattgaagatgacaa 30048407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30062971 - 30062748
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcac---gaccacaat 97  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  30062971 cttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttccttcaaaaagaccacaat 30062872  T
Q  98 taaattcaaaatatgcaaagaaaggtttgtttaagaagttatgtttagatatctcatccttttttagctccatatcagattttggatcaagcttaatcaa 197  Q
    || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||    
T  30062871 tagattcaaaatatgcaaagaaaagtttgtttaagaagttatgtatagatatctcatccttttttagctccatatcagattttggatcaagcatattgaa 30062772  T
Q  198 gacaagaatgattgaagatgacaa 221  Q
    ||||| ||||||||||||||||||    
T  30062771 gacaacaatgattgaagatgacaa 30062748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30228769 - 30228546
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcac---gaccacaat 97  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  30228769 cttggtgatggttactctctcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttccttcacaaagaccacaat 30228670  T
Q  98 taaattcaaaatatgcaaagaaaggtttgtttaagaagttatgtttagatatctcatccttttttagctccatatcagattttggatcaagcttaatcaa 197  Q
    ||||||||||||||||||||| |   || ||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| || | ||    
T  30228669 taaattcaaaatatgcaaagataaacttatttgagaagctatgttttgttatctcatccttttttagctccatatcagattttggatcaagcatattgaa 30228570  T
Q  198 gacaagaatgattgaagatgacaa 221  Q
    ||||||||||||| ||||||||||    
T  30228569 gacaagaatgattaaagatgacaa 30228546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30032384 - 30032161
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcac---gaccacaat 97  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||   |||||||||    
T  30032384 cttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctttatcttttccttcacaaagaccacaat 30032285  T
Q  98 taaattcaaaatatgcaaagaaaggtttgtttaagaagttatgtttagatatctcatccttttttagctccatatcagattttggatcaagcttaatcaa 197  Q
    || |||||||||||||||| | |   || ||||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||||||| |||| ||    
T  30032284 tagattcaaaatatgcaaaaataaacttatttaagaagctatgctttgatatctcctcctttttcagctccatatcagattttggatcaagcataattaa 30032185  T
Q  198 gacaagaatgattgaagatgacaa 221  Q
    ||||||||||||||||||||||||    
T  30032184 gacaagaatgattgaagatgacaa 30032161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30271326 - 30271238
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcacg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  30271326 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtcttttccttcacg 30271238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30280863 - 30280951
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcacg 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  30280863 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtcttttccttcacg 30280951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30304393 - 30304305
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttcacg 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||    
T  30304393 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagttgatgacccttctcttcctttgtcttttccttcacg 30304305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 30264432 - 30264349
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttcct 84  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||    
T  30264432 cttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 30264349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30287756 - 30287839
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttcct 84  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||    
T  30287756 cttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 30287839  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2311405 - 2311490
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcctctatcttttccttc 86  Q
    ||||| |||||||| ||||| |||||||| |||||||||||||||||| | ||||||||||| ||||||||| | |||||||||||    
T  2311405 cttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtcttttccttc 2311490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 79604 - 79534
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcc 71  Q
    ||||| |||||||||||||| |||||||| |||||||| ||| || ||||||||||| | |||||||||||    
T  79604 cttggagatggttactctctaatgggtgcacttctttcatgtttagaaagagctgataacccttctcttcc 79534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 72540 - 72470
Alignment:
Q  1 cttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgatccttctcttcc 71  Q
    ||||| |||||||||||||| ||||| |||||||| || ||| || ||||||||||| | |||| ||||||    
T  72540 cttggagatggttactctctaatgggagctcttctatcatgtttagaaagagctgataacccttttcttcc 72470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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