View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_3 (Length: 560)
Name: NF3991_low_3
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 540
Target Start/End: Original strand, 51108751 - 51109269
Alignment:
| Q |
12 |
acatcatcaaccaacaccaccaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactgaaggcacaaacacaaaatgcgcg |
111 |
Q |
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| T |
51108751 |
acatcatcaaccaacaccaccaatacatagcaaagctaccaaacacataacgtgaaggataatgctcaagcttactgaaggcacaaacacaaaatgcgcg |
51108850 |
T |
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| Q |
112 |
acatgaataaaaccaagagacgcagattgtcacaataccaaaatcaccatggaacatattcccaatagcaaagatgacaattttgatagtgttgaaaaga |
211 |
Q |
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| T |
51108851 |
acatgaataaaaccaagagacgcagattgtcacaataccaaaatcaccatgcaacatattcccaatagcaaagatgacaattttgatagtgttg------ |
51108944 |
T |
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| Q |
212 |
gattgtttctaaggaacattcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttgtaaattacctgaacgggtgcag |
311 |
Q |
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| T |
51108945 |
----gtttctaaggaacattcatgcattaaggtttctttgttcataattaagccctagttacaactactagaagtttgtaaattacctgaacgggtgcag |
51109040 |
T |
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| Q |
312 |
cataacacctcacgctgtttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagtttt |
411 |
Q |
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| T |
51109041 |
cataacacctcacgctgtttaaaacaattggagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagtttt |
51109140 |
T |
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| Q |
412 |
aggtttgggaatagaatttgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttccgatt |
511 |
Q |
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| T |
51109141 |
aggttcgggaatagaatttgagaaagaagcatgaagcaggtgagtgtaacatctgcgaaattgaaatgtcctctcggtattcagcctaaagtttcagatt |
51109240 |
T |
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| Q |
512 |
cgatgcagaaatgacataacctcaacggt |
540 |
Q |
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| T |
51109241 |
cgatgcagaaatgacataacctcaacggt |
51109269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 342 - 427
Target Start/End: Original strand, 51116634 - 51116719
Alignment:
| Q |
342 |
gagaaacatttatgggtctagtattatggaaaagcgaatgcgaatatggcataacagtagggagagttttaggtttgggaatagaa |
427 |
Q |
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| T |
51116634 |
gagaaacatttatgggtctagtactatggaaaagcgaatgtgaatatggcataaccgtagggagagttttaggcttgggagtagaa |
51116719 |
T |
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