View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3991_low_30 (Length: 214)

Name: NF3991_low_30
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3991_low_30
NF3991_low_30
[»] chr8 (30 HSPs)
chr8 (1-214)||(6311326-6311541)
chr8 (1-214)||(36979406-36979620)
chr8 (1-214)||(30655675-30655889)
chr8 (1-214)||(18870415-18870630)
chr8 (1-214)||(33037662-33037874)
chr8 (1-214)||(18853021-18853236)
chr8 (1-214)||(4759929-4760143)
chr8 (63-214)||(25328184-25328334)
chr8 (63-214)||(7289831-7289982)
chr8 (1-214)||(10688994-10689211)
chr8 (28-212)||(1261836-1262020)
chr8 (28-212)||(31071111-31071295)
chr8 (68-214)||(39784734-39784878)
chr8 (118-214)||(10684224-10684320)
chr8 (68-214)||(35745420-35745566)
chr8 (28-114)||(26288020-26288105)
chr8 (28-114)||(26301277-26301362)
chr8 (28-114)||(26313271-26313356)
chr8 (159-214)||(4456057-4456113)
chr8 (157-212)||(26403240-26403296)
chr8 (160-214)||(26287930-26287985)
chr8 (160-214)||(26301187-26301242)
chr8 (160-214)||(26313181-26313236)
chr8 (159-212)||(19175766-19175820)
chr8 (159-212)||(7412372-7412426)
chr8 (157-212)||(5702493-5702549)
chr8 (157-212)||(6127252-6127308)
chr8 (160-212)||(4696609-4696662)
chr8 (179-212)||(9765852-9765885)
chr8 (157-212)||(23799587-23799643)
[»] chr5 (32 HSPs)
chr5 (1-214)||(31180243-31180456)
chr5 (1-214)||(30631435-30631649)
chr5 (63-214)||(1457067-1457218)
chr5 (63-214)||(43592308-43592459)
chr5 (63-214)||(43598753-43598904)
chr5 (63-214)||(43604245-43604396)
chr5 (63-214)||(43609737-43609888)
chr5 (63-213)||(27445000-27445150)
chr5 (63-213)||(27449844-27449994)
chr5 (63-214)||(15044715-15044865)
chr5 (1-214)||(24135877-24136089)
chr5 (28-214)||(38219427-38219613)
chr5 (68-214)||(28807485-28807628)
chr5 (28-214)||(35387691-35387877)
chr5 (68-214)||(37556533-37556678)
chr5 (68-214)||(37561355-37561500)
chr5 (47-214)||(38192202-38192369)
chr5 (118-214)||(31396953-31397049)
chr5 (118-214)||(31401810-31401906)
chr5 (68-214)||(2785404-2785550)
chr5 (68-214)||(33791345-33791491)
chr5 (28-211)||(15464564-15464747)
chr5 (123-214)||(33768208-33768299)
chr5 (159-212)||(9353344-9353398)
chr5 (159-212)||(36932362-36932416)
chr5 (157-208)||(10281786-10281838)
chr5 (157-212)||(3880330-3880386)
chr5 (157-212)||(11916982-11917038)
chr5 (159-212)||(12084187-12084241)
chr5 (160-212)||(28832290-28832343)
chr5 (28-108)||(36932232-36932312)
chr5 (157-212)||(17003970-17004026)
[»] chr3 (42 HSPs)
chr3 (1-214)||(28503718-28503932)
chr3 (1-199)||(28501551-28501750)
chr3 (1-214)||(7167273-7167487)
chr3 (1-214)||(2671440-2671654)
chr3 (1-214)||(8477391-8477607)
chr3 (1-214)||(8738917-8739131)
chr3 (1-214)||(9091155-9091369)
chr3 (1-214)||(40372650-40372863)
chr3 (63-214)||(22173100-22173251)
chr3 (28-212)||(26928472-26928657)
chr3 (78-214)||(18656464-18656598)
chr3 (28-212)||(32143352-32143536)
chr3 (64-214)||(2676993-2677143)
chr3 (64-214)||(2672837-2672987)
chr3 (28-212)||(27452989-27453173)
chr3 (118-214)||(8512246-8512342)
chr3 (118-214)||(8517126-8517222)
chr3 (28-214)||(1305977-1306163)
chr3 (118-214)||(32475514-32475608)
chr3 (118-214)||(32480372-32480466)
chr3 (64-203)||(24968147-24968286)
chr3 (159-212)||(8370488-8370542)
chr3 (159-212)||(16264381-16264435)
chr3 (159-212)||(27974954-27975008)
chr3 (160-212)||(27986449-27986502)
chr3 (160-212)||(33386669-33386722)
chr3 (157-212)||(1736305-1736361)
chr3 (157-212)||(18552883-18552939)
chr3 (157-212)||(36029124-36029180)
chr3 (157-212)||(48438245-48438301)
chr3 (159-212)||(6794715-6794769)
chr3 (159-212)||(21711254-21711308)
chr3 (160-212)||(1417493-1417546)
chr3 (28-108)||(27986329-27986408)
chr3 (157-212)||(30709790-30709846)
chr3 (157-210)||(26299021-26299075)
chr3 (28-108)||(33386548-33386628)
chr3 (160-212)||(39039995-39040048)
chr3 (157-212)||(3716002-3716058)
chr3 (176-212)||(4386947-4386983)
chr3 (157-212)||(25795812-25795868)
chr3 (157-212)||(40592782-40592838)
[»] chr4 (27 HSPs)
chr4 (1-214)||(24741969-24742183)
chr4 (1-214)||(29760670-29760883)
chr4 (63-214)||(51520486-51520637)
chr4 (63-214)||(9224312-9224463)
chr4 (63-214)||(9229099-9229250)
chr4 (64-210)||(45357203-45357348)
chr4 (64-210)||(45347723-45347869)
chr4 (63-214)||(3814053-3814202)
chr4 (78-214)||(5732694-5732828)
chr4 (123-214)||(56146677-56146767)
chr4 (68-214)||(18855756-18855900)
chr4 (28-114)||(28468420-28468506)
chr4 (30-212)||(31985519-31985699)
chr4 (159-212)||(36315241-36315295)
chr4 (159-212)||(36329450-36329504)
chr4 (157-212)||(10047410-10047466)
chr4 (157-212)||(16623303-16623359)
chr4 (157-212)||(39246025-39246081)
chr4 (158-212)||(5143290-5143345)
chr4 (157-210)||(38152449-38152503)
chr4 (160-212)||(5269204-5269257)
chr4 (160-212)||(28468542-28468595)
chr4 (157-212)||(3796529-3796585)
chr4 (157-212)||(24333840-24333896)
chr4 (159-212)||(5396683-5396737)
chr4 (157-210)||(16630690-16630744)
chr4 (157-212)||(6743425-6743481)
[»] chr2 (27 HSPs)
chr2 (1-214)||(11098781-11098995)
chr2 (1-214)||(14291517-14291731)
chr2 (1-214)||(9296256-9296469)
chr2 (63-214)||(39811894-39812044)
chr2 (64-214)||(32246817-32246966)
chr2 (28-214)||(3491779-3491965)
chr2 (97-214)||(44312563-44312680)
chr2 (27-212)||(25398526-25398711)
chr2 (27-212)||(25403664-25403849)
chr2 (27-212)||(25407653-25407838)
chr2 (68-214)||(19344450-19344596)
chr2 (68-214)||(19349308-19349454)
chr2 (28-108)||(40738967-40739047)
chr2 (157-212)||(8040091-8040147)
chr2 (157-212)||(13569359-13569415)
chr2 (156-212)||(20522251-20522308)
chr2 (157-212)||(10445454-10445510)
chr2 (157-212)||(17865234-17865290)
chr2 (157-212)||(34388889-34388945)
chr2 (159-212)||(28259189-28259243)
chr2 (157-210)||(34682344-34682398)
chr2 (157-212)||(8390160-8390216)
chr2 (157-212)||(10707262-10707318)
chr2 (157-212)||(21629975-21630030)
chr2 (157-212)||(31056075-31056131)
chr2 (160-212)||(40738874-40738926)
chr2 (157-212)||(14699018-14699073)
[»] chr7 (30 HSPs)
chr7 (1-214)||(20357401-20357615)
chr7 (1-214)||(1533298-1533512)
chr7 (1-214)||(2057994-2058211)
chr7 (62-214)||(12406360-12406512)
chr7 (63-214)||(24024232-24024382)
chr7 (63-214)||(12396940-12397091)
chr7 (28-214)||(21639837-21640023)
chr7 (63-214)||(31109489-31109639)
chr7 (68-214)||(19992342-19992487)
chr7 (28-214)||(21646035-21646221)
chr7 (32-214)||(18408792-18408973)
chr7 (154-214)||(4866759-4866819)
chr7 (28-214)||(18413669-18413853)
chr7 (118-214)||(24261283-24261379)
chr7 (118-214)||(24266162-24266258)
chr7 (118-214)||(16880102-16880197)
chr7 (118-214)||(16884958-16885053)
chr7 (68-214)||(21812149-21812294)
chr7 (158-212)||(21983315-21983370)
chr7 (157-212)||(29159834-29159890)
chr7 (157-212)||(49091692-49091748)
chr7 (159-212)||(44848696-44848750)
chr7 (157-212)||(2647706-2647762)
chr7 (157-212)||(33332460-33332516)
chr7 (157-212)||(46516320-46516376)
chr7 (159-212)||(35960847-35960901)
chr7 (160-212)||(2580421-2580474)
chr7 (160-212)||(9190021-9190074)
chr7 (160-212)||(20284120-20284173)
chr7 (157-212)||(55979-56034)
[»] chr1 (28 HSPs)
chr1 (1-214)||(24787218-24787432)
chr1 (63-214)||(41390610-41390760)
chr1 (63-214)||(41398265-41398415)
chr1 (28-214)||(24202651-24202837)
chr1 (64-214)||(25444996-25445145)
chr1 (28-212)||(19358725-19358909)
chr1 (28-212)||(19361314-19361498)
chr1 (28-212)||(19379954-19380138)
chr1 (68-214)||(1054923-1055067)
chr1 (68-214)||(39445529-39445673)
chr1 (68-214)||(44023785-44023929)
chr1 (28-114)||(19366190-19366276)
chr1 (118-214)||(43988424-43988520)
chr1 (157-212)||(27104382-27104438)
chr1 (157-212)||(47703946-47704002)
chr1 (159-212)||(26644909-26644963)
chr1 (159-212)||(37069801-37069855)
chr1 (157-212)||(16124526-16124582)
chr1 (157-212)||(19072959-19073015)
chr1 (157-212)||(19120849-19120905)
chr1 (157-212)||(29651842-29651898)
chr1 (159-212)||(3281739-3281793)
chr1 (159-212)||(21536581-21536635)
chr1 (157-212)||(775703-775759)
chr1 (157-212)||(9476292-9476348)
chr1 (157-212)||(13598429-13598485)
chr1 (64-138)||(25439803-25439877)
chr1 (159-212)||(13604635-13604689)
[»] chr6 (21 HSPs)
chr6 (1-214)||(5674624-5674838)
chr6 (63-214)||(11857003-11857154)
chr6 (63-214)||(22010602-22010753)
chr6 (63-214)||(14737482-14737632)
chr6 (63-214)||(28184534-28184684)
chr6 (64-214)||(28155477-28155625)
chr6 (63-212)||(14742342-14742490)
chr6 (64-214)||(33330351-33330501)
chr6 (68-214)||(6438530-6438674)
chr6 (64-212)||(33335848-33335996)
chr6 (64-210)||(16838777-16838923)
chr6 (68-214)||(6005446-6005592)
chr6 (28-114)||(22709137-22709223)
chr6 (159-212)||(5757490-5757544)
chr6 (160-211)||(22709050-22709102)
chr6 (158-212)||(10077176-10077231)
chr6 (159-211)||(31086485-31086538)
chr6 (157-212)||(5572251-5572307)
chr6 (157-212)||(18232876-18232932)
chr6 (162-212)||(21356067-21356118)
chr6 (157-212)||(21801354-21801410)
[»] scaffold0135 (1 HSPs)
scaffold0135 (63-214)||(34967-35118)
[»] scaffold0355 (2 HSPs)
scaffold0355 (63-214)||(9549-9698)
scaffold0355 (63-145)||(3754-3836)
[»] scaffold0188 (2 HSPs)
scaffold0188 (28-214)||(17834-18020)
scaffold0188 (28-214)||(23927-24113)
[»] scaffold0464 (1 HSPs)
scaffold0464 (68-214)||(392-536)
[»] scaffold0197 (2 HSPs)
scaffold0197 (118-214)||(14269-14365)
scaffold0197 (95-214)||(19102-19221)
[»] scaffold0259 (1 HSPs)
scaffold0259 (118-214)||(2211-2307)
[»] scaffold0028 (1 HSPs)
scaffold0028 (118-214)||(148916-149012)
[»] scaffold0140 (1 HSPs)
scaffold0140 (28-212)||(8301-8485)
[»] scaffold0009 (1 HSPs)
scaffold0009 (174-214)||(181980-182020)
[»] scaffold0098 (1 HSPs)
scaffold0098 (160-212)||(45284-45337)
[»] scaffold0087 (1 HSPs)
scaffold0087 (159-207)||(43973-44022)
[»] scaffold0148 (1 HSPs)
scaffold0148 (157-212)||(10760-10816)
[»] scaffold0006 (3 HSPs)
scaffold0006 (157-212)||(2523-2579)
scaffold0006 (157-212)||(5714-5770)
scaffold0006 (159-212)||(133292-133346)
[»] scaffold0036 (1 HSPs)
scaffold0036 (159-212)||(85714-85768)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6311541 - 6311326
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctctttt--agggttcatcttgtgagagtggggaaacacca 98  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  6311541 caccttgggtagtgaggagttcattagttggaaggatcaaaagcttcctctagtgacttctcttttttagggttcatcttgtgagagtggggaaacacca 6311442  T
Q  99 aagggtagaatctagggtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctc 198  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  6311441 aagggtagaatctagggtttgtcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctctc 6311342  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  6311341 tcccccagattaggcc 6311326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 36979620 - 36979406
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  36979620 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaa 36979521  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||| || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  36979520 gggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 36979422  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  36979421 tcccccagattaggcc 36979406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 30655889 - 30655675
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  30655889 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaa 30655790  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||| || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| ||||||| |||||||||| |||||||    
T  30655789 gggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattagattggagagctgctctc 30655691  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  30655690 tcccccagattaggcc 30655675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18870415 - 18870630
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  18870415 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaataccaaa 18870514  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaa-ccttttgtaacactttc-tcatattggattggagagatgctct 197  Q
    |||||||||||||||| || |||||||| ||||||||  ||||  | |||||| || ||||||||||||||||| | |||||||||||||||| ||||||    
T  18870515 gggtagaatctagggtttgttcttgtgt-aagcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctgctct 18870613  T
Q  198 ctcccccagattaggcc 214  Q
    |||||||||||||||||    
T  18870614 ctcccccagattaggcc 18870630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 33037662 - 33037874
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||  |     
T  33037662 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttt-agggttcatattgtgagagtggggaaacacatat 33037760  T
Q  101 gggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctct 199  Q
    |||||||||||||||| ||| ||||||||| ||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  33037761 gggtagaatctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctct 33037859  T
Q  200 cccccagattaggcc 214  Q
    |||||||||||||||    
T  33037860 cccccagattaggcc 33037874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18853021 - 18853236
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  18853021 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaataccaaa 18853120  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaa-ccttttgtaacactttc-tcatattggattggagagatgctct 197  Q
    ||||| |||||||||| || |||||||| ||||||||  ||||  | |||||| || ||||||||||||||||| | |||||||||||||||| ||||||    
T  18853121 gggtaaaatctagggtttgttcttgtgt-aagcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctgctct 18853219  T
Q  198 ctcccccagattaggcc 214  Q
    |||||||||||||||||    
T  18853220 ctcccccagattaggcc 18853236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4759929 - 4760143
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |     
T  4759929 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatat 4760028  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||  || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  4760029 gggtagaatctagggcttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 4760127  T
Q  199 tcccccagattaggcc 214  Q
    ||||||| ||||||||    
T  4760128 tcccccatattaggcc 4760143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 25328184 - 25328334
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||    
T  25328184 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacctttt 25328281  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25328282 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 25328334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 7289831 - 7289982
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  7289831 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatatagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 7289929  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7289930 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 7289982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10688994 - 10689211
Alignment:
Q  1 caccttgggtagtgaggagttcattggttgga--aggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacacca 98  Q
    ||||||||||||||||||||||||| |||||   ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||    
T  10688994 caccttgggtagtgaggagttcattagttgggggaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaaca 10689093  T
Q  99 -aagggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgct 195  Q
     | |||||||||||||||  || |||||||| ||||||||  ||||  | |||||| |||| | |||||||||||| |||||||||||||||||| ||||    
T  10689094 tatgggtagaatctagggcttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctctgtaacactttcatcatattggattggagagctgct 10689192  T
Q  196 ctctcccccagattaggcc 214  Q
    |||||||||||||||||||    
T  10689193 ctctcccccagattaggcc 10689211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 1261836 - 1262020
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtg 126  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||   ||| ||||||    
T  1261836 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgtacttgtg 1261935  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  1261936 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 1262020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 31071111 - 31071295
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| | ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||   || |||||||    
T  31071111 ttggaaggatcttaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtg 31071210  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  31071211 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 31071295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 39784734 - 39784878
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||||||  ||||| ||||||||||||    
T  39784734 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaa 39784830  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  39784831 cactt-cacatattggattggagagctgctctctcccccagattaggcc 39784878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 10684224 - 10684320
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  10684224 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 10684320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 35745566 - 35745420
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgta 164  Q
    ||||||||  |||||| ||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||| | ||||||  |||||| ||| ||||||||    
T  35745566 gggttcatagtgtgagggtgggaaaataccaaagggtagg-tctagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgta 35745470  T
Q  165 acactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  35745469 acacattcacatattggattggagagctgctctctcccccagattaggcc 35745420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 26288105 - 26288020
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagg 114  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| || |||||||| |||||    
T  26288105 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactagg 26288020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 26301362 - 26301277
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagg 114  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| || |||||||| |||||    
T  26301362 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactagg 26301277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 26313356 - 26313271
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagg 114  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| || |||||||| |||||    
T  26313356 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtgggg-aacacaaatgggtagaaactagg 26313271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 4456113 - 4456057
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  4456113 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 4456057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 26403240 - 26403296
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  26403240 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 26403296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 26287985 - 26287930
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  26287985 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 26287930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 26301242 - 26301187
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  26301242 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 26301187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 26313236 - 26313181
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  26313236 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 26313181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 19175766 - 19175820
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  19175766 tttgtaacactttcatcatagtggattggagagttgctctctcccccagattagg 19175820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 7412426 - 7412372
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||    
T  7412426 tttgtaacactttcatcatagtggattggagagctgctctctcccccatattagg 7412372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 5702493 - 5702549
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| |||||  ||||||||| |||||||||||||||| ||||||    
T  5702493 cttttgtaacactttcatcataggggattggagggatgctctctcccccatattagg 5702549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 6127308 - 6127252
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||| ||||| ||||||    
T  6127308 cttttgtaacactttcatcatagtggattggagagctgctctcttccccaaattagg 6127252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 4696609 - 4696662
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||| ||||| ||||| |||||||||| | |||||||||||||||||||||    
T  4696609 ttgtaactctttcatcatagtggattggagggctgctctctcccccagattagg 4696662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 9765852 - 9765885
Alignment:
Q  179 tggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||| |||||||||||||||||||||    
T  9765852 tggattggagagctgctctctcccccagattagg 9765885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 23799587 - 23799643
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||| ||| ||||||    
T  23799587 cttttgtaacactttcatcatagtggattggagggctgctctctcctccaaattagg 23799643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 31180456 - 31180243
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  31180456 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttatggttcatattgtgagagtggggaaacaccaaa 31180357  T
Q  101 gggtagaatctagggtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctctc 200  Q
    |||||||||||||||| |||||||||||||||||||  ||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||    
T  31180356 gggtagaatctagggtttgtcttgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctctc 31180257  T
Q  201 ccccagattaggcc 214  Q
    ||||||||||||||    
T  31180256 ccccagattaggcc 31180243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 30631649 - 30631435
Alignment:
Q  1 caccttgggtagtg-aggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaa 99  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  30631649 caccttgggtagtggaggagttcattagttggaaggatctaaagcttcctctagtgacttctcttt-agggttcatattgtgagagtggggaaacaccaa 30631551  T
Q  100 agggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctc 198  Q
    ||||||||||||| ||| ||| | ||||||||||||||  ||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  30631550 agggtagaatctatggtttgttcatgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctc 30631451  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  30631450 tcccccagattaggcc 30631435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 1457067 - 1457218
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  1457067 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 1457165  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1457166 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 1457218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 43592459 - 43592308
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  43592459 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43592361  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43592360 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 43592308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 43598904 - 43598753
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  43598904 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43598806  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43598805 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 43598753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 43604396 - 43604245
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  43604396 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43604298  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43604297 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 43604245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 43609888 - 43609737
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  43609888 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43609790  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43609789 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 43609737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 27445150 - 27445000
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  27445150 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27445052  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggc 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27445051 gtaacactttctcatattggattggagagctgctctctcccccagattaggc 27445000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 27449994 - 27449844
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  27449994 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27449896  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggc 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27449895 gtaacactttctcatattggattggagagctgctctctcccccagattaggc 27449844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 15044865 - 15044715
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | |||||||||||||| ||||||||  ||||| ||||||||    
T  15044865 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaacctttt 15044768  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  15044767 gtaacactttctcatattggattggagagctgctctctcccccatattaggcc 15044715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 24136089 - 24135877
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    |||||||||||||||||||||||    |||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  24136089 caccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcacattgtgagagtggggaaacaccaaa 24135991  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    ||||||||||||||   || |||||||| |||||||  |||||    |||||| |||| |||||||||||||| || || || |||||| || |||||||    
T  24135990 gggtagaatctaggacttgttcttgtgt-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcttagtgcattggatagctgctctc 24135893  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  24135892 tcccccagattaggcc 24135877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 38219613 - 38219427
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||   || |||||||    
T  38219613 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtg 38219514  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  38219513 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 38219427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 28807485 - 28807628
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaac 166  Q
    ||||||||  |||||||||||| ||| ||||||||||||| |||||||| ||| | |||||||||||||| |||||||  |||||| |||||||||||||    
T  28807485 gggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaac 28807581  T
Q  167 actttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||| | ||||||||||||||||| |||||||||||||||||||||||    
T  28807582 actt-cacatattggattggagagctgctctctcccccagattaggcc 28807628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 35387877 - 35387691
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagg-gtctgtcttgtg 126  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||  |   |||||||    
T  35387877 ttggaaggatctaaaacttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttattcttgtg 35387778  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| | |||||||||| |||||||||||||||||||||||    
T  35387777 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtagattggagagctgctctctcccccagattaggcc 35387691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 37556533 - 37556678
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| ||||||  | |||| ||||||||||||    
T  37556533 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctaga--tacttgtaaccttttgtaa 37556629  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  37556630 cactttcacatattggattggagagctgctctctcccccagattaggcc 37556678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 37561355 - 37561500
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| ||||||  | |||| ||||||||||||    
T  37561355 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctaga--tacttgtaaccttttgtaa 37561451  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  37561452 cactttcacatattggattggagagctgctctctcccccagattaggcc 37561500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 38192369 - 38192202
Alignment:
Q  47 cctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagag 145  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||   ||| ||||||||| |||||  |||||       
T  38192369 cctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa-gcttgcaagctattt 38192271  T
Q  146 cttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
     |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  38192270 -ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 38192202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 31396953 - 31397049
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  31396953 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 31397049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 31401810 - 31401906
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||    
T  31401810 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccatattaggcc 31401906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 2785550 - 2785404
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgta 164  Q
    ||||||||  |||||| ||||| ||| ||||||||||||  |||||||| ||| | || ||||||||||| | ||||||  |||||| ||| ||||||||    
T  2785550 gggttcatagtgtgagggtgggaaaataccaaagggtagg-tctagggtttgttcatgagtaaagcttgaaaagctaga--ttcttgtaactcttttgta 2785454  T
Q  165 acactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  2785453 acacattcacatattggattggagagctgctctctcccccagattaggcc 2785404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 33791491 - 33791345
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgta 164  Q
    ||||||||  |||||| ||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||| | ||||||  |||||| ||| ||||||||    
T  33791491 gggttcatagtgtgagggtgggaaaataccaaagggtagg-tctagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgta 33791395  T
Q  165 acactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||| ||| ||||||||||||||||| |||||| ||||||||||||||||    
T  33791394 acacattcacatattggattggagagctgctctttcccccagattaggcc 33791345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 15464747 - 15464564
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatc-ttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgt 125  Q
    ||||||||||  |||||||||| | ||| |||||||||||||||||||  ||||||||||||| |||||| || ||||||||  ||||   ||| |||||    
T  15464747 ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttcattattgtgagagtggg-aaacacaaatgggtagaaattaggtcttgttcttgt 15464649  T
Q  126 gtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattag 211  Q
    |||| |||||  |||||    |||||| |||  |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  15464648 gtaa-gcttgcaagctattt-ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattag 15464564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 33768299 - 33768208
Alignment:
Q  123 tgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||| | ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||    
T  33768299 tgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctcccccccagattaggcc 33768208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 9353344 - 9353398
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  9353344 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 9353398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 36932362 - 36932416
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  36932362 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 36932416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 10281838 - 10281786
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagat 208  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||    
T  10281838 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagat 10281786  T

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Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 3880386 - 3880330
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||| || |||||||||    
T  3880386 cttttgtaacactttcatcatagtggattggagagctgctctctgcctcagattagg 3880330  T

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Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 11916982 - 11917038
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| | ||| |||||||||||| |||||||||||||| ||||||    
T  11916982 cttttgtaacactttcattatagtggattggagagctgctctctcccccatattagg 11917038  T

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Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 12084187 - 12084241
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||| ||||| ||||||    
T  12084187 tttgtaacactttcatcatagtggattggagagctgctctctgccccatattagg 12084241  T

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Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 28832343 - 28832290
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| || || |||||||||| | |||||||||||||||||||||    
T  28832343 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattagg 28832290  T

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Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 36932232 - 36932312
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttca-tcttgtgagagtggggaaacaccaaagggtagaa 108  Q
    ||||||||||  |||||||||||| ||| ||||| |||||||||||| | ||| |||||| ||||||||| || ||||||||    
T  36932232 ttggaaggatcaaaagcttcctcttgtgtcttctgttttagggttcattattgagagagt-gggaaacacaaatgggtagaa 36932312  T

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Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 17003970 - 17004026
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||| || |||||| ||||| ||||||| |||| |||||||||||||||||||||    
T  17003970 cttttgaaatactttcatcatagtggattgaagagctgctctctcccccagattagg 17004026  T

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Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28503718 - 28503932
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28503718 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgacttctcttttagggttcatattgtgagagtggggaaacaccaaa 28503817  T
Q  101 gggtagaatctagggtct-gtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctct 199  Q
    |||||||||||||||| |  |||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  28503818 gggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctctct 28503917  T
Q  200 cccccagattaggcc 214  Q
     ||||||||||||||    
T  28503918 tccccagattaggcc 28503932  T

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Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 28501551 - 28501750
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28501551 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgacttctcttttagggttcatattgtgagagtggggaaacaccaaa 28501650  T
Q  101 gggtagaatctagggtct-gtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctct 199  Q
    |||||||||||||||| |  |||||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  28501651 gggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctctct 28501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 7167487 - 7167273
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  7167487 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaataccaaa 7167388  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||| || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  7167387 gggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 7167289  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  7167288 tcccccagattaggcc 7167273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2671440 - 2671654
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |     
T  2671440 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatat 2671539  T
Q  101 gggtagaatctaggg-tctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    ||||||||||||||| |  ||||||||| |||||||  | |||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  2671540 gggtagaatctagggcttggtcttgtgt-aagcttgcaatctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 2671638  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  2671639 tcccccagattaggcc 2671654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8477607 - 8477391
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagt-ggggaaacaccaa 99  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  8477607 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgggggaaacaccaa 8477508  T
Q  100 agggtagaatctagg--gtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctc 196  Q
    |||||||||||||||   | | | |||||| |||||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||    
T  8477507 agggtagaatctaggtcttgtttattgtgt-aagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctc 8477409  T
Q  197 tctcccccagattaggcc 214  Q
    ||||||||||||||||||    
T  8477408 tctcccccagattaggcc 8477391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 8738917 - 8739131
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||  |     
T  8738917 caccttgggtagtgaggagttcattagttgaaaggatctaaagcttcctctagtgtcttctcttctagggttcatattgtgagagtggggaaatacatat 8739016  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||  || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  8739017 gggtagaatctagggattgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 8739115  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  8739116 tcccccagattaggcc 8739131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9091155 - 9091369
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||  |     
T  9091155 caccttgggtagtgaggagttcattagttgaaaggatctaaagcttcctctagtgtcttctcttctagggttcatattgtgagagtggggaaatacatat 9091254  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||  || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  9091255 gggtagaatctagggattgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 9091353  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  9091354 tcccccagattaggcc 9091369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 40372650 - 40372863
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||  |     
T  40372650 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattatgagagtggggaaacacatat 40372749  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||  || |||||||| |||||||  |||||    |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  40372750 gggtagaatctagggcttgttcttgtgt-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 40372847  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  40372848 tcccccagattaggcc 40372863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 22173100 - 22173251
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  22173100 ttttagggttcatattaggagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22173198  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22173199 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 22173251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 26928472 - 26928657
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    ||||||||||  |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||   || |||||||    
T  26928472 ttggaaggatcaaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 26928571  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  26928572 t-aagcttgcaagctattttttcttgtaaccctttgtaacactttcatcatagtggattggagagttgctctctcccccagattagg 26928657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 18656598 - 18656464
Alignment:
Q  78 tgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcat 176  Q
    |||||||||||| ||| ||||||||||||| |||||||| ||| | ||||||||||||||  |||||||  ||||| |||||||||||||||||||||||    
T  18656598 tgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaatgctagag--tcttgtaaccttttgtaacactttctcat 18656502  T
Q  177 attggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18656501 attggattggagagctgctctctcccccagattaggcc 18656464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 32143536 - 32143352
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    ||||||||||  |||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||   || |||||||    
T  32143536 ttggaaggatcaaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 32143437  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  32143436 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 32143352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 2676993 - 2677143
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttt 160  Q
    ||||||||||||  ||||||  |||| ||| ||||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| ||||    
T  2676993 tttagggttcatagtgtgaggatgggaaaataccaaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttt 2677089  T
Q  161 tgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  2677090 tgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 2677143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 2672837 - 2672987
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttt 160  Q
    |||| |||||||  ||||||  |||| ||| ||||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| ||||    
T  2672837 tttaaggttcatagtgtgaggatgggaaaataccaaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttt 2672933  T
Q  161 tgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  2672934 tgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 2672987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 27453173 - 27452989
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    ||||||||||  |||||||||| | ||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||||  ||||   || |||||||    
T  27453173 ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaaaataggaattgttcttgtg 27453074  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||    
T  27453073 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccggattagg 27452989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 8512342 - 8512246
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  8512342 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 8512246  T

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Target: chr3; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 8517222 - 8517126
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  8517222 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 8517126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 1306163 - 1305977
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| | ||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| || |||||||| ||| |   || |||||||    
T  1306163 ttggaaggatcttaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaaactatgacttgttcttgtg 1306064  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  | |||    |||||| |||| |||||||||||||| || || |||||||||||| |||| ||||||| ||||||||||    
T  1306063 t-aagcttgcaaacta-tttttcttgtaaccctttgtaacactttcatcgtagtggattggagagctgctatctcccctagattaggcc 1305977  T

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Target: chr3; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 32475608 - 32475514
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||    
T  32475608 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagattaggcc 32475514  T

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Target: chr3; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 32480466 - 32480372
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||    
T  32480466 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagattaggcc 32480372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 24968286 - 24968147
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttga-tagctagagcttcttgcaac-cttt 160  Q
    ||||||||||||  ||||||  |||| ||  ||||||||||||| ||| |||| ||| | |||||||||||||| ||||||||  |||||| ||| ||||    
T  24968286 tttagggttcatagtgtgaggatgggaaagtaccaaagggtaga-tctcgggtttgttcatgtgtaaagcttgaatagctaga--ttcttgtaactcttt 24968190  T
Q  161 tgtaacactttctcatattggattggagagatgctctctcccc 203  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||    
T  24968189 tgtaacacattcacatattggattggagagctactctctcccc 24968147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 8370488 - 8370542
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  8370488 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 8370542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 16264435 - 16264381
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  16264435 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 16264381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 27974954 - 27975008
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  27974954 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 27975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 27986449 - 27986502
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  27986449 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 27986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 33386669 - 33386722
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  33386669 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 33386722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 1736305 - 1736361
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  1736305 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 1736361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 18552883 - 18552939
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  18552883 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 18552939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 36029180 - 36029124
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  36029180 cttttgtaacactttcatcatagtggattggagagctgctttctcccccagattagg 36029124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 48438301 - 48438245
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  48438301 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 48438245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 6794715 - 6794769
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||    
T  6794715 tttgtaacactttcatcatagtggattggagagctgctctctcccccatattagg 6794769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 21711308 - 21711254
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||    
T  21711308 tttgtaacactttcatcatagtggatttgagagctgctctctcccccagattagg 21711254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 1417493 - 1417546
Alignment:
Q  160 ttgtaacactttct-catattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| | || |||||||||| |||||||||||||||||||||||    
T  1417493 ttgtaacactttcttcttagtggattggagggatgctctctcccccagattagg 1417546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 27986329 - 27986408
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaa 108  Q
    ||||||||||  |||||||||| | ||| |||||||||||||||| || ||| |||||| ||||||||| || ||||||||    
T  27986329 ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttgatattgagagagt-gggaaacacaaatgggtagaa 27986408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 30709790 - 30709846
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||| |||| ||||| |||||||||| | |||||||||||||||||||||    
T  30709790 cttttgtaacaatttcatcatagtggattggagggctgctctctcccccagattagg 30709846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 26299075 - 26299021
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagatta 210  Q
    |||||||||||||||| ||||| | |||||||| | |||||||||||||||||||    
T  26299075 cttttgtaacactttcatcatagtagattggagggctgctctctcccccagatta 26299021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 33386548 - 33386628
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttca-tcttgtgagagtggggaaacaccaaagggtagaa 108  Q
    ||||||||||  |||||||||| | ||| |||||||||||||||||| | ||| |||||| ||||||||| || ||||||||    
T  33386548 ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttcattattgagagagt-gggaaacacaaatgggtagaa 33386628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 39039995 - 39040048
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| ||||| |||||||||||| || ||||| ||||||||||||    
T  39039995 ttgtaacactttcatcatagtggattggagagttgttctcttccccagattagg 39040048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 3716002 - 3716058
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| | |||||||||| ||||||||| || ||||||||    
T  3716002 cttttgtaacactttcatcatagtagattggagagctgctctctctcctagattagg 3716058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 4386947 - 4386983
Alignment:
Q  176 tattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  4386947 tattggattggagagctgctctctcccccagagtagg 4386983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 25795868 - 25795812
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||| ||||||||||| || || | |||||||||| |||||||||||||||||||||    
T  25795868 ctttcgtaacactttcatcttagtagattggagagctgctctctcccccagattagg 25795812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 40592782 - 40592838
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| | |||||||||| | ||||||||| |||||||||    
T  40592782 cttttgtaacactttcatcatagtcgattggagagcttctctctcccacagattagg 40592838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 24742183 - 24741969
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  24742183 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaa 24742084  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||| || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  24742083 gggtagaatctagggtttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 24741985  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  24741984 tcccccagattaggcc 24741969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 29760883 - 29760670
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||  |||||||||||  |||||||||||||||||||||||    
T  29760883 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctc--ttagggttcatagtgtgagagtggggaaacaccaaa 29760786  T
Q  101 gggtagaatctagg--gtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctct 197  Q
    ||||||||||||||   | | |||||||| |||||||   ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| ||||||    
T  29760785 gggtagaatctaggtcttgtttcttgtgt-aagcttgcaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctct 29760687  T
Q  198 ctcccccagattaggcc 214  Q
    |||||||||||||||||    
T  29760686 ctcccccagattaggcc 29760670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 51520637 - 51520486
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  51520637 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 51520539  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51520538 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 51520486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 9224312 - 9224463
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||  ||||||| |||||  ||||||||    
T  9224312 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 9224410  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9224411 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 9224463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 9229099 - 9229250
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||  ||||||| |||||  ||||||||    
T  9229099 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 9229197  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9229198 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 9229250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 210
Target Start/End: Original strand, 45357203 - 45357348
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttg 162  Q
    ||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | |||||||||||||| ||||||||  ||||| |||||||||    
T  45357203 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttg 45357300  T
Q  163 taacactttctcatattggattggagagatgctctctcccccagatta 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  45357301 taacactttctcatattggattggagagctgctctctcccccagatta 45357348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 64 - 210
Target Start/End: Original strand, 45347723 - 45347869
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttg 162  Q
    ||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | ||||||||||||||  ||||||| | |||| |||||||||    
T  45347723 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagaggt-cttgtaaccttttg 45347821  T
Q  163 taacactttctcatattggattggagagatgctctctcccccagatta 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  45347822 taacactttctcatattggattggagagctgctctctcccccagatta 45347869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 3814202 - 3814053
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| ||||||||||||| |||||||| ||| | |||||||||||||| ||||||||  ||||| ||||||||    
T  3814202 ttttagggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaacctttt 3814106  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3814105 gtaacactttcacatattggattggagagctgctctctcccccagattaggcc 3814053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 5732828 - 5732694
Alignment:
Q  78 tgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcat 176  Q
    |||||||||||| ||| ||||||||||||| |||||||| ||| | |||||||||||||| ||||||||  ||||| |||||||||||||||||||||||    
T  5732828 tgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttgtaacactttctcat 5732732  T
Q  177 attggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||| |||||||||||||||||||||||    
T  5732731 attggattggagagctgctctctcccccagattaggcc 5732694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 56146677 - 56146767
Alignment:
Q  123 tgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  56146677 tgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggcc 56146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 18855900 - 18855756
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||||||  ||||| ||||||||||||    
T  18855900 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaa 18855804  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  18855803 cactt-cacatattggattggagagctgctctctcccccagattaggcc 18855756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 28468420 - 28468506
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagg 114  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||    
T  28468420 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctagg 28468506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 31985519 - 31985699
Alignment:
Q  30 ggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtgta 128  Q
    ||||||||  |||||||||| | ||| ||||||||||||||||||  |||||||||| ||||||||| || ||||||||  ||||   || ||||||||     
T  31985519 ggaaggatcaaaagcttccttttgtgtcttctcttttagggttcacattgtgagagt-gggaaacacaaatgggtagaaattaggacttgttcttgtgt- 31985616  T
Q  129 aagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||    
T  31985617 aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctct-ccccagattagg 31985699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 36315241 - 36315295
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  36315241 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 36315295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 36329450 - 36329504
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  36329450 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 36329504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 10047466 - 10047410
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  10047466 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 10047410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 16623303 - 16623359
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  16623303 cttttgtaacactttcatcatagtggattggagagctgctctctcctccagattagg 16623359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 39246081 - 39246025
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  39246081 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 39246025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 5143345 - 5143290
Alignment:
Q  158 ttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||    
T  5143345 ttttgtaacactttcatcatagtgggttggagagctgctctctcccccagattagg 5143290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 38152449 - 38152503
Alignment:
Q  157 cttttgtaacactttctc-atattggattggagagatgctctctcccccagatta 210  Q
    |||||||||||||||| | ||| |||||||||||| |||||||||||||||||||    
T  38152449 cttttgtaacactttcaccatagtggattggagagctgctctctcccccagatta 38152503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 5269204 - 5269257
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  5269204 ttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 5269257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 28468542 - 28468595
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  28468542 ttgtaacactttcatcatagtggattggagagctgctctctcctccagattagg 28468595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 3796529 - 3796585
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||||||||| ||||||    
T  3796529 cttttgtaacactttcatcatagtggattagagagttgctctctcccccatattagg 3796585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 24333896 - 24333840
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||| ||| ||||| |||||||||||| |||||||||||||| ||||||    
T  24333896 cttttgtaacacgttcatcatagtggattggagagctgctctctcccccaaattagg 24333840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 5396683 - 5396737
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||| ||||||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  5396683 tttgcaacactttcatcatagtggattggagagctgctctctcctccagattagg 5396737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 16630690 - 16630744
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagatta 210  Q
    |||||||||||||||| ||||| |||||||||||| || ||||||| ||||||||    
T  16630690 cttttgtaacactttcatcatagtggattggagagctgttctctcctccagatta 16630744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 6743425 - 6743481
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||  ||||||||    
T  6743425 cttttgtaacactttcatcatagtggattggagggctgctctctcccgtagattagg 6743481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11098781 - 11098995
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  11098781 caccttgggtagtgaggagtacattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaa 11098880  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||| || |||||||| |||||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  11098881 gggtagaatctagggtttgttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 11098979  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  11098980 tcccccagattaggcc 11098995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14291731 - 14291517
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |     
T  14291731 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatat 14291632  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||  || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  14291631 gggtagaatctagggcttgttcttgtgt-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 14291533  T
Q  199 tcccccagattaggcc 214  Q
    ||||||||||||||||    
T  14291532 tcccccagattaggcc 14291517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9296256 - 9296469
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    |||||||||||||||||||||||    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |     
T  9296256 caccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatat 9296354  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctc 198  Q
    |||||||||||||||  || |||||| | ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  9296355 gggtagaatctagggcttgttcttgtat-aagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctc 9296453  T
Q  199 tcccccagattaggcc 214  Q
    ||||||| ||||||||    
T  9296454 tcccccaaattaggcc 9296469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 39811894 - 39812044
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||    
T  39811894 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacctttt 39811991  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39811992 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 39812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 32246966 - 32246817
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttg 162  Q
    ||||||||||||  |||||||||||| ||| ||||||||||| |||||||||| ||| | |||||||||||||| ||||||||  ||||| |||||||||    
T  32246966 tttagggttcatagtgtgagagtgggaaaataccaaagggtataatctagggtttgttcatgtgtaaagcttgaaagctagag--tcttgtaaccttttg 32246869  T
Q  163 taacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32246868 taacactttctcatattggattggagagctgctctctcccccagattaggcc 32246817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 3491965 - 3491779
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| | ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||   || |||||||    
T  3491965 ttggaaggatcttaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 3491866  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  3491865 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 3491779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 44312563 - 44312680
Alignment:
Q  97 caaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgct 195  Q
    |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  44312563 caaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttttgtaacactttctcatattggattggagagctgct 44312661  T
Q  196 ctctcccccagattaggcc 214  Q
    |||||||||||||||||||    
T  44312662 ctctcccccagattaggcc 44312680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 25398711 - 25398526
Alignment:
Q  27 gttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgt 125  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||   || ||||||    
T  25398711 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25398612  T
Q  126 gtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    || |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  25398611 gt-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 25398526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 25403849 - 25403664
Alignment:
Q  27 gttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgt 125  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||   || ||||||    
T  25403849 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25403750  T
Q  126 gtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    || |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  25403749 gt-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 25403664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 25407838 - 25407653
Alignment:
Q  27 gttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgt 125  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||   || ||||||    
T  25407838 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25407739  T
Q  126 gtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    || |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  25407738 gt-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 25407653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 19344596 - 19344450
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgta 164  Q
    ||||||||  |||||| ||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||| | ||||||  |||||| ||| ||||||||    
T  19344596 gggttcatagtgtgagggtgggaaaataccaaagggtagg-tctagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgta 19344500  T
Q  165 acactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||| ||| ||||||||||||||||| |||||||||||| ||||||||||    
T  19344499 acacattcacatattggattggagagctgctctctcccctagattaggcc 19344450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 19349454 - 19349308
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgta 164  Q
    ||||||||  |||||| ||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||| | ||||||  |||||| ||| ||||||||    
T  19349454 gggttcatagtgtgagggtgggaaaataccaaagggtagg-tctagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgta 19349358  T
Q  165 acactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||| ||| ||||||||||||||||| |||||||||||| ||||||||||    
T  19349357 acacattcacatattggattggagagctgctctctcccctagattaggcc 19349308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 40739047 - 40738967
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaa 108  Q
    ||||||||||  ||||||| || | ||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  40739047 ttggaaggatcaaaagcttactattgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaa 40738967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 8040147 - 8040091
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  8040147 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 8040091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 13569415 - 13569359
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  13569415 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 13569359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 20522308 - 20522251
Alignment:
Q  156 ccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  20522308 ccttttgtaacactttcatcatagtggattggagggttgctctctcccccagattagg 20522251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 10445454 - 10445510
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||    
T  10445454 cttttgtaacactttcataatagtggattggagagctgctctctcccccagattagg 10445510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 17865290 - 17865234
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  17865290 cttttgtaacactttcatcatagtggattggagggttgctctctcccccagattagg 17865234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 34388945 - 34388889
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||    
T  34388945 cttttgtaacactttcatcatagtggattggagagctactctctcccccagattagg 34388889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 28259189 - 28259243
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||    
T  28259189 tttgtaacactttcatcatagtggattggagagctgctctctcccccaaattagg 28259243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 34682344 - 34682398
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagatta 210  Q
    |||||||||||||||| | ||| |||||||||||| |||||||||||||||||||    
T  34682344 cttttgtaacactttcattatagtggattggagagctgctctctcccccagatta 34682398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 8390160 - 8390216
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||| |||||||||| ||||| |||||||||||| |||||||||||||| ||||||    
T  8390160 cttttttaacactttcatcatagtggattggagagctgctctctcccccaaattagg 8390216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 10707262 - 10707318
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| || ||||||||||| ||||||    
T  10707262 cttttgtaacactttcatcatagtggattggagagttgttctctcccccatattagg 10707318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 21630030 - 21629975
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||    
T  21630030 cttttgtaacactttcatcatagtggattggagagctgctctct-ccccagattagg 21629975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 31056131 - 31056075
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| || || |||||||||||| |||||||||||| ||||||||    
T  31056131 cttttgtaacactttcatcttagtggattggagagctgctctctcccctagattagg 31056075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 40738926 - 40738874
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||    
T  40738926 ttgtaacactttcatcatagtggattggagagctgctctc-cccccagattagg 40738874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 14699018 - 14699073
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||| ||||| ||||| |||||||||| | |||||||||||||||||||||    
T  14699018 cttttgtaac-ctttcatcatagtggattggagggctgctctctcccccagattagg 14699073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20357401 - 20357615
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |     
T  20357401 caccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatat 20357500  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctct 199  Q
    |||||||||||||||  || |||||||||||||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  20357501 gggtagaatctagggcatgttcttgtgtaaagcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctct 20357600  T
Q  200 cccccagattaggcc 214  Q
    |||||| ||||||||    
T  20357601 cccccaaattaggcc 20357615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1533298 - 1533512
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    |||||||||||||||||||||||    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  1533298 caccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgggaaaacaccaaa 1533396  T
Q  101 gggtagaatctagg--gtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctct 197  Q
    ||||||||||||||   | | |||||||| |||||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||||||||||    
T  1533397 gggtagaatctaggtcttgtttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagatgctct 1533495  T
Q  198 ctcccccagattaggcc 214  Q
    |||||||||||||||||    
T  1533496 ctcccccagattaggcc 1533512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 2058211 - 2057994
Alignment:
Q  1 caccttgggtagtgaggagttcattggttgga--aggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacacca 98  Q
    ||||||||||||||||||||||||| |||||   ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||    
T  2058211 caccttgggtagtgaggagttcattagttgggggaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaaca 2058112  T
Q  99 -aagggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgct 195  Q
     | |||||||||||||||  || |||||||| ||||||||  ||||  | |||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  2058111 tatgggtagaatctagggcttgttcttgtgt-aagcttgaatgctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgct 2058013  T
Q  196 ctctcccccagattaggcc 214  Q
    |||||||||||||||||||    
T  2058012 ctctcccccagattaggcc 2057994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 12406512 - 12406360
Alignment:
Q  62 cttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttt 160  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| |||||||    
T  12406512 cttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttt 12406414  T
Q  161 tgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  12406413 tgtaacactttctcatattggattggagagctattctctcccccagattaggcc 12406360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 24024232 - 24024382
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||| ||||    
T  24024232 ttttagggttcatcgtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacatttt 24024329  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24024330 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 24024382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 12397091 - 12396940
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||| || |  ||||||| |||||| ||||||||    
T  12397091 ttttagggttcatattgtgatagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagattaaaggctagag-ttcttgtaacctttt 12396993  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  12396992 gtaacactttctcatattggattggagagctgttctctcccccagattaggcc 12396940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 21640023 - 21639837
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||   || |||||||    
T  21640023 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 21639924  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||    
T  21639923 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcattatagtggattggagagctgctctctcccccagattaggcc 21639837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 31109489 - 31109639
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| | |||||||||||||||||||| ||| | |||| |||||||||  |||||||  ||||| ||||||||    
T  31109489 ttttagggttcatagtgtgagagtgggaaaatatcaaagggtagaatctagggtttgttcatgtgcaaagcttgaaggctagag--tcttgtaacctttt 31109586  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  31109587 gtaacactttctcatattggattggagagctgctctctcccctagattaggcc 31109639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 19992487 - 19992342
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||||||  ||||| ||||||||||||    
T  19992487 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaa 19992391  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  19992390 cactttcacatattggattggagagctgctctctcccccagattaggcc 19992342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 21646221 - 21646035
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||   || |||||||    
T  21646221 ttggaaggatctaaatcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 21646122  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| ||| |||||||||| ||||| |||||||||||| |||||||| ||| ||||||||||    
T  21646121 t-aagcttgcaagcta-tttttcttgtaaccctttttaacactttcatcatagtggattggagagctgctctcttccctagattaggcc 21646035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 18408973 - 18408792
Alignment:
Q  32 aaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaa 130  Q
    |||||| | ||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||| || |||||||| |||||   ||| |||||||||     
T  18408973 aaggatcttaagcttcctcttgtgtcttc-cttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaa- 18408876  T
Q  131 gcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||  || ||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  18408875 gcttgcaagttattt-ttcttgtaaccctttgtaacactttcatcatactggattggagagctgctctctcccccagattaggcc 18408792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 4866819 - 4866759
Alignment:
Q  154 aaccttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4866819 aaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggcc 4866759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 18413853 - 18413669
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| | ||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||| || |||||||| |||||   || |||||||    
T  18413853 ttggaaggatcttaagcttcctcttgtgtcttc-cttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtg 18413755  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  | |||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||    
T  18413754 t-aagcttgcaatcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctct-ccccagattaggcc 18413669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 24261283 - 24261379
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  24261283 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 24261379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 24266162 - 24266258
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  24266162 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 24266258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 16880197 - 16880102
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||    
T  16880197 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagattaggcc 16880102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 16885053 - 16884958
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| |||  ||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||    
T  16885053 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagattaggcc 16884958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 21812149 - 21812294
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagctt-gata-gctagagcttcttgcaaccttttgta 164  Q
    ||||||||  |||||||||||| ||| ||||||||||||| |||||||| ||| | |||||||||||| || | |||||||  ||||| |||||||||||    
T  21812149 gggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagctttgacaagctagag--tcttggaaccttttgta 21812245  T
Q  165 acactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||| | |||||||||||||| || |||||||||||||||||||||||    
T  21812246 agactt-cacatattggattggaaagctgctctctcccccagattaggcc 21812294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 21983370 - 21983315
Alignment:
Q  158 ttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  21983370 ttttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 21983315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 29159890 - 29159834
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||    
T  29159890 cttttgtaacactttcatcatagtggattggagagctgctctctcccctagattagg 29159834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 49091748 - 49091692
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||    
T  49091748 cttttgtaacactttcatcatagtggattggagagttgctctcttccccagattagg 49091692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 44848696 - 44848750
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||||| |||||    
T  44848696 tttgtaacactttcatcatagtggattggagagctgctctctcccccaggttagg 44848750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 2647706 - 2647762
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||| ||||    
T  2647706 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagaatagg 2647762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 33332460 - 33332516
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| || || |||||||||| | |||||||||||||||||||||    
T  33332460 cttttgtaacactttcatcttagtggattggagggctgctctctcccccagattagg 33332516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 46516320 - 46516376
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||| ||||||||    
T  46516320 cttttgtaacactttcatcatagtggattggagggctgctctctcccctagattagg 46516376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 35960901 - 35960847
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| ||| |||||| | |||||||||||||||||||||    
T  35960901 tttgtaacactttcatcatagtggtttggagggctgctctctcccccagattagg 35960847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 2580474 - 2580421
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| || || |||||||||||| |||||||||||||||| ||||    
T  2580474 ttgtaacactttcatcttagtggattggagagctgctctctcccccagactagg 2580421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 9190021 - 9190074
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| || || |||||||||||| |||||||||||||||| ||||    
T  9190021 ttgtaacactttcatcttagtggattggagagctgctctctcccccagactagg 9190074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 20284173 - 20284120
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||| || || |||||||||| | |||||||||||||||||||||    
T  20284173 ttgtaacactttcatcttagtggattggagggctgctctctcccccagattagg 20284120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 56034 - 55979
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||| ||||||||||||    
T  56034 cttttgtaacactttcatcatagtggattggagggctgctctct-ccccagattagg 55979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 24787218 - 24787432
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    ||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  24787218 caccttgggcagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagttgggaaacaccaaa 24787317  T
Q  101 gggtagaatctagggtctg-tcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttctcatattggattggagagatgctctct 199  Q
    |||||||||||||| | || |||||||||| ||||||  ||||  | |||||| |||| |||||||||||||||||||||||||||||||| |||||||     
T  24787318 gggtagaatctaggatttgttcttgtgtaatgcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctcc 24787417  T
Q  200 cccccagattaggcc 214  Q
    |||||||||||||||    
T  24787418 cccccagattaggcc 24787432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 41390760 - 41390610
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||    
T  41390760 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacctttt 41390663  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41390662 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 41390610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 41398415 - 41398265
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||    
T  41398415 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacctttt 41398318  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41398317 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 41398265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 24202651 - 24202837
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||   || |||||||    
T  24202651 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 24202750  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  24202751 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 24202837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 25444996 - 25445145
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaacctttt 161  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||||||  ||||| ||||||||    
T  25444996 tttagggttcatagtgtgagagtgggaaaataccaaagggtagc-tctagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaacctttt 25445092  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25445093 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 25445145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 19358725 - 19358909
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||   || |||||||    
T  19358725 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 19358824  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||    
T  19358825 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattagg 19358909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 19361314 - 19361498
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||   || |||||||    
T  19361314 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 19361413  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  | |||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||    
T  19361414 t-aagcttgcaaacta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattagg 19361498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 19379954 - 19380138
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||   || |||||||    
T  19379954 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctaggtcttgttcttgtg 19380053  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    | |||||||  | |||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||    
T  19380054 t-aagcttgcaaacta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattagg 19380138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 1054923 - 1055067
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||||||  ||||| ||||||||||||    
T  1054923 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaa 1055019  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  1055020 cactt-cacatattggattggagagttgctctctcccccagattaggcc 1055067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 39445673 - 39445529
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||||||  ||||| ||||||||||||    
T  39445673 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaa 39445577  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  39445576 cactt-cacatattggattggagagctgctctctcccccagattaggcc 39445529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 44023785 - 44023929
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||| | |||||||  ||||| ||||||||||||    
T  44023785 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgacaagctagag--tcttgtaaccttttgtaa 44023881  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  44023882 cactt-cacatattggattggagagctgctctctcccccagattaggcc 44023929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 19366190 - 19366276
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagg 114  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||    
T  19366190 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtggggaaacacaaatgggtagaatctagg 19366276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 43988424 - 43988520
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  43988424 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 43988520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 27104382 - 27104438
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  27104382 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 27104438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 47703946 - 47704002
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  47703946 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 47704002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 26644909 - 26644963
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  26644909 tttgtaacactttcatcataatggattggagagctgctctctcccccagattagg 26644963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 37069855 - 37069801
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  37069855 tttgtaacactttcatcatagtggatcggagagatgctctctcccccagattagg 37069801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 16124526 - 16124582
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  16124526 cttttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 16124582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 19073015 - 19072959
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| || || |||||||||||| |||||||||||||||||||||    
T  19073015 cttttgtaacactttcatcttagtggattggagagctgctctctcccccagattagg 19072959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 19120905 - 19120849
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| || || |||||||||||| |||||||||||||||||||||    
T  19120905 cttttgtaacactttcatcttagtggattggagagctgctctctcccccagattagg 19120849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 29651898 - 29651842
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  29651898 cttttgtaacactttcatcatagtggattggagtgctgctctctcccccagattagg 29651842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 3281793 - 3281739
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||  |||||||||||| |||||||||||||||||||||    
T  3281793 tttgtaacactttcatcatcgtggattggagagctgctctctcccccagattagg 3281739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 21536581 - 21536635
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| | ||| |||||||||||| |||||||||||||||||||||    
T  21536581 tttgtaacactttcattatagtggattggagagctgctctctcccccagattagg 21536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 775759 - 775703
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| || || |||||||||||| | |||||||||||||||||||    
T  775759 cttttgtaacactttcatcttagtggattggagagctactctctcccccagattagg 775703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 9476348 - 9476292
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||| |||||| ||||| |||||||||||| |||||||||||| ||||||||    
T  9476348 cttttgtaatactttcatcatagtggattggagagctgctctctcccctagattagg 9476292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 13598485 - 13598429
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| ||||||| || | |||||||||||||||||||||    
T  13598485 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattagg 13598429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 25439803 - 25439877
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtgtaaagcttgata 138  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||  |||||||| || || ||||||||||||||||    
T  25439803 tttagggttcatagtgtgagagtgggaaaataccaaagggtag-ctctagggtttgttcatgtgtaaagcttgata 25439877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 13604635 - 13604689
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||| |||| ||||| |||||||||||| |||||||||||||| ||||||    
T  13604635 tttgtaacattttcatcatagtggattggagagctgctctctcccccatattagg 13604689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5674624 - 5674838
Alignment:
Q  1 caccttgggtagtgaggagttcattggttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaa 100  Q
    |||||||||||||||||||||||    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  5674624 caccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacaccaaa 5674722  T
Q  101 gggtagaatctagg--gtctgtcttgtgtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctct 197  Q
    ||||||||||||||   | | |||||||| |||||||  |||||  | |||||| |||| |||||||||||||| |||||||||||||||||| ||||||    
T  5674723 gggtagaatctaggtcttgtttcttgtgt-aagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctct 5674821  T
Q  198 ctcccccagattaggcc 214  Q
    |||||||||||||||||    
T  5674822 ctcccccagattaggcc 5674838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 11857154 - 11857003
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  11857154 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 11857056  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  11857055 gtaacactttctcatattggattggagagctgctctctcccccatattaggcc 11857003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 22010602 - 22010753
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||| | ||||||||||||||  ||||||| |||||| ||||||||    
T  22010602 ttttagggttcatattgtgagagtggggaaatatcaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22010700  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22010701 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 22010753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 14737482 - 14737632
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | | ||||||||||||  |||||||  ||||| ||||||||    
T  14737482 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagag--tcttgtaacctttt 14737579  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14737580 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 14737632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 28184684 - 28184534
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | ||||||||||||||  |||||||  | ||| ||||||||    
T  28184684 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag--tgttgtaacctttt 28184587  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  28184586 gtaacactttctcatattagattggagagctgctctctcccccagattaggcc 28184534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 28155477 - 28155625
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaaccttttg 162  Q
    ||||||||||||  |||||||||||| ||| ||||||||||||| |||||||| ||| | |||||||||||||| ||||| |  |||||| |||||||||    
T  28155477 tttagggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctaaa--ttcttgtaaccttttg 28155573  T
Q  163 taacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28155574 taacactttctcatattggattggagagctgctctctcccccagattaggcc 28155625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 14742342 - 14742490
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| ||| | | ||||||||||||  |||||||  ||||| ||||||||    
T  14742342 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggctagag--tcttgtaacctttt 14742439  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  14742440 gtaacactttctcatattggattggagagctgctctctcccccaaattagg 14742490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 33330351 - 33330501
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttt 160  Q
    ||||||||||||  ||||||  |||| ||| ||||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| ||||    
T  33330351 tttagggttcatagtgtgaggatgggaaaataccaaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttt 33330447  T
Q  161 tgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  33330448 tgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 33330501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 6438674 - 6438530
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||| | |||||||  ||||| ||||||||||||    
T  6438674 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgacaagctagag--tcttgtaaccttttgtaa 6438578  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  6438577 cactt-cacatattggattggagagctgctctctcccccagattaggcc 6438530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 33335848 - 33335996
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttt 160  Q
    ||||||||||||  ||||||  |||| ||| ||||||||||||| |||||||| | ||| |||||||||||||||| ||||||  |||||| ||| ||||    
T  33335848 tttagggttcatagtgtgaggatgggaaaataccaaagggtaga-tctagggttttgtcatgtgtaaagcttgataagctaga--ttcttgtaactcttt 33335944  T
Q  161 tgtaacactttctcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  33335945 tgtaacacattcacatattggattggagagctgctctctcccccagattagg 33335996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 210
Target Start/End: Complemental strand, 16838923 - 16838777
Alignment:
Q  64 tttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttga-tagctagagcttcttgcaac-cttt 160  Q
    ||||||||||||  ||||||  |||| ||| ||||||||||||| |||||||| ||| | |||||||||||||| ||||||||  |||||| ||| ||||    
T  16838923 tttagggttcatagtgtgaggatgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaatagctaga--ttcttgtaactcttt 16838827  T
Q  161 tgtaacactttctcatattggattggagagatgctctctcccccagatta 210  Q
    |||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  16838826 tgtaacacattcacatattggattggagagctgctctctcccccagatta 16838777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 6005592 - 6005446
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgta 164  Q
    ||||||||  |||||| ||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||| | ||||||  |||||| ||| ||||||||    
T  6005592 gggttcatagtgtgagggtgggaaaataccaaagggtagg-tctagggtttgttcatgtgtaaagcttgaaaagctaga--ttcttgtaactcttttgta 6005496  T
Q  165 acactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  6005495 acacattcacatattggattggagagctgctctctcccccagattaggcc 6005446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 22709223 - 22709137
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagg 114  Q
    ||||||||||  ||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||    
T  22709223 ttggaaggatcaaaaacttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactagg 22709137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 5757490 - 5757544
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  5757490 tttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 5757544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 22709102 - 22709050
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattag 211  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  22709102 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattag 22709050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 10077176 - 10077231
Alignment:
Q  158 ttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||    
T  10077176 ttttgtaacactttcatcatagtggattggagggctgctctctcccccagattagg 10077231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 31086485 - 31086538
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattag 211  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||| |||||||    
T  31086485 tttgtaacactttcatcatagtggattggagagttgctctctcccctagattag 31086538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 5572251 - 5572307
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||||||||||| ||||||||    
T  5572251 cttttgtaacactttcatcatagtggattggagggctgctctctcccctagattagg 5572307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 18232932 - 18232876
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| || ||||||| | |||||||||||||||||||||    
T  18232932 cttttgtaacactttcatcatagtgaattggagggttgctctctcccccagattagg 18232876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 21356118 - 21356067
Alignment:
Q  162 gtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  21356118 gtaacactttcatcatagtggattggagagctgctctctcctccagattagg 21356067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 21801354 - 21801410
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||  || || |||||||||||| ||||| |||||||||||||||    
T  21801354 cttttgtaacacttttatcttagtggattggagagctgctcgctcccccagattagg 21801410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 34967 - 35118
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||  ||||||| |||||  ||||||||    
T  34967 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 35065  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35066 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 35118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 9549 - 9698
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgatagctagagcttcttgcaacctttt 161  Q
    |||||||||||||  |||||||||||| ||| ||||||||||||| |||||||| ||| | ||||||||||||||  |||||||  ||||| ||||||||    
T  9549 ttttagggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaggctagag--tcttgtaacctttt 9645  T
Q  162 gtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9646 gtaacactttctcatattggattggagagctgctctctcccccagattaggcc 9698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 3754 - 3836
Alignment:
Q  63 ttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtgtaaagcttgatagctagag 145  Q
    |||||||||||||  |||||||||||| ||| |||||||||||| ||||||||| || || ||||||||||||||  |||||||    
T  3754 ttttagggttcatagtgtgagagtgggaaaataccaaagggtag-atctagggtttgttcatgtgtaaagcttgaaggctagag 3836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 17834 - 18020
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| ||| |   || |||||||    
T  17834 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtg 17933  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  17934 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 18020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 23927 - 24113
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctg-tcttgtg 126  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| ||| |   || |||||||    
T  23927 ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactatgacttgttcttgtg 24026  T
Q  127 taaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattaggcc 214  Q
    | |||||||  |||||    |||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  24027 t-aagcttgcaagcta-tttttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggcc 24113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 536 - 392
Alignment:
Q  68 gggttcatcttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgtgtaaagcttgata-gctagagcttcttgcaaccttttgtaa 165  Q
    ||||||||  |||||||||||| ||| ||||||||||||  |||||||| ||| | |||||||||||||||| |||||||  ||||| ||||||||||||    
T  536 gggttcatagtgtgagagtgggaaaataccaaagggtagt-tctagggtttgttcatgtgtaaagcttgataagctagag--tcttgtaaccttttgtaa 440  T
Q  166 cactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  439 cactt-cacatattggattggagagctgctctctcccccagattaggcc 392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 14269 - 14365
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  14269 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccagattaggcc 14365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 19102 - 19221
Alignment:
Q  95 accaaagggtagaatctagggtct-gtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagaga 191  Q
    ||||||||||||| |||||||| | |||||||||||||||||||| ||||||  |||||| ||| ||||||||||||  || ||||||| |||||||||     
T  19102 accaaagggtaga-tctagggttttgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacactcacatattgtattggagagc 19198  T
Q  192 tgctctctcccccagattaggcc 214  Q
    |||||||||||||||||||||||    
T  19199 tgctctctcccccagattaggcc 19221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 2211 - 2307
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  2211 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctcccccagattaggcc 2307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 148916 - 149012
Alignment:
Q  118 tgtcttgtgtaaagcttgata-gctagagcttcttgcaac-cttttgtaacactttctcatattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  148916 tgtcttgtgtaaagcttgataagctaga--ttcttgtaactcttttgtaacacattcacatattggattggagagctactctctcccccagattaggcc 149012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 8301 - 8485
Alignment:
Q  28 ttggaaggatttaaagcttcctctagtgacttctcttttagggttcatc-ttgtgagagtggggaaacaccaaagggtagaatctagggtctgt-cttgt 125  Q
    ||||||||||| |||||||||| | ||| |||||||||||||||||||  ||| ||||||||| |||||| ||   ||||||  ||||   ||| |||||    
T  8301 ttggaaggattaaaagcttccttttgtgtcttctcttttagggttcattattgagagagtggg-aaacacaaatacgtagaaattaggtcttgttcttgt 8399  T
Q  126 gtaaagcttgatagctagagcttcttgcaaccttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||| |||||  |||||    |||||| |||  |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  8400 gtaa-gcttgcaagctattt-ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 8485  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 181980 - 182020
Alignment:
Q  174 catattggattggagagatgctctctcccccagattaggcc 214  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  181980 catattggattggagagctgctctctcccccagattaggcc 182020  T

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Target: scaffold0098 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 45337 - 45284
Alignment:
Q  160 ttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||    
T  45337 ttgtaacgctttcatcatagtggattggagagctgctctctcccccagattagg 45284  T

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Target: scaffold0087 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 43973 - 44022
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccaga 207  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  43973 tttgtaacactttcatcatagtggattggagagctgctctctcccccaga 44022  T

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Target: scaffold0148 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 10816 - 10760
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| || || |||||||||||| |||||||||||||| ||||||    
T  10816 cttttgtaacactttcatcttagtggattggagagctgctctctcccccaaattagg 10760  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 2579 - 2523
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| |||||||||| | |||| ||||||||||||||||    
T  2579 cttttgtaacactttcatcatagtggattggagggctgctgtctcccccagattagg 2523  T

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Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 5770 - 5714
Alignment:
Q  157 cttttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||||| ||||| ||||||| || | |||||||||||||||||||||    
T  5770 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattagg 5714  T

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Target: scaffold0006; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 133292 - 133346
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    ||||||||| |||| ||||| |||||||||||| |||||||||||||| ||||||    
T  133292 tttgtaacattttcatcatagtggattggagagctgctctctcccccatattagg 133346  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 85768 - 85714
Alignment:
Q  159 tttgtaacactttc-tcatattggattggagagatgctctctcccccagattagg 212  Q
    |||||||||||||| ||||  ||||||||||||  ||||||||||||||||||||    
T  85768 tttgtaacactttcatcatggtggattggagagccgctctctcccccagattagg 85714  T

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