View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3991_low_8 (Length: 430)
Name: NF3991_low_8
Description: NF3991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3991_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 51010856 - 51010452
Alignment:
| Q |
11 |
catcaacatatacgcagttactttcagttcctgtttctgaattttcctcaagttcatcttgaagttccttcacttgtttctgcaaatccttcacaaattc |
110 |
Q |
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| T |
51010856 |
catcaacatatacgcagttactttcagttcctgtttctgaattttcctcaagttcatcttgaagttccttcacttgcttctgcaaatccttcacaaattc |
51010757 |
T |
|
| Q |
111 |
aatagcatcaccaagaatagaagctctatcaagctttgagattcttggaaccaatgaacgaaggttatataacctatcattcagtttcttccttcttttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51010756 |
aatagcatcaccaagaatagaagctctatcaagctttgagattcttggaaccaatgaacgaaggttatataacctatcattcagtttcttccttcttttt |
51010657 |
T |
|
| Q |
211 |
ctctcagcaacaaggttctttgattggtttccttttccacttcttctcctatattttccatcatcctcttcttcattttgatcactgcaatctgacattg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51010656 |
ctctcagcaacaaggttctttgattggtttccttttccacttcttctcctatattttccatcatcctcttcttcattttgatcactgcaatctgacattg |
51010557 |
T |
|
| Q |
311 |
aatctgatctgccaacaacattttcttgcttcttttttgtgtctaaaggatccacaaacatatattgattattttctgtcatcaagcttttgttatcatg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
51010556 |
aatctgatctgccaacaacattttcttgcttcttttttgtgtctaaaggatccacaaacacatattgattattttctgtcatcaagcttttgctatcatg |
51010457 |
T |
|
| Q |
411 |
ttcct |
415 |
Q |
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||||| |
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| T |
51010456 |
ttcct |
51010452 |
T |
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