View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_12 (Length: 451)
Name: NF3992_high_12
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Original strand, 6083772 - 6084181
Alignment:
| Q |
13 |
cataggcaaaaacagatgtagaaaaacaattatcttaattggatgaagccaagacacaataccaagaccacccaaaaatcatgaatttacacacaaactt |
112 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6083772 |
cataagcaaaaacagatggagaaaaacaattatcttaattggatgaagccaa-------------gaccacccaaaaatcatgaatttacacacaaactt |
6083858 |
T |
|
| Q |
113 |
tacagctttcatacatccgagcttaataaaaataacatttcatccgccaagaatatttcaatggctcattttccttcctagtttctattggttaataaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6083859 |
tacagctttcatacatccgagcttaataaaaacaacatttcatccgcaaagaatatttcaatagctcattttccttcctagtttctattggttaataaaa |
6083958 |
T |
|
| Q |
213 |
gcacaagagaaacttggttagtaaaaatagtatatcactccaatcaaaataaaagtacatacaagttctaattatattgaaaaagatcttcatcctacaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6083959 |
gcacaagagaaacttggttagtaaaaatagtatatcactccaatcaaaataaaagtacatacaagttctaattatattgaaaaagatcttcatcctacaa |
6084058 |
T |
|
| Q |
313 |
agtcatgaaacatttgcccaccaattacatctcttccaaaatgcctattttgtgattcaaaaccactcataacataattaccttcattattggtttcaag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6084059 |
agtcatgaaacatttgcccaccaattacatctcttccaaaatgcctattttgtgattcaaaaccactcataacataattaccttcattattggtttcaag |
6084158 |
T |
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| Q |
413 |
gccaagaccaaatcgttgagctg |
435 |
Q |
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||||||||||||||||||||||| |
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| T |
6084159 |
gccaagaccaaatcgttgagctg |
6084181 |
T |
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