View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_14 (Length: 446)
Name: NF3992_high_14
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 31647820 - 31648207
Alignment:
| Q |
14 |
agatcttattaaacttaaatgttttgagtgcttctttcccttgcttggagggatttgctacaaccaaatcagattcaccaatacgttccacaatagtttg |
113 |
Q |
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| T |
31647820 |
agatcttattaaacttaaatgttttgagtgcttctttcccttgcttggagggatttgctacaaccaaatcagattcaccaatacgttccacaatagtttg |
31647919 |
T |
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| Q |
114 |
tttttctttttgtccaggaagaaatggtctaattctacaatatactctaatatttcctgtataaagaaaatatttatcagaattctcaatagtgacatac |
213 |
Q |
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| T |
31647920 |
tttttctttttgtccaggaagaaatggtctaattctacaatatactctaatatttcctgtataaagaaaatatttatcagaattctcaatagtgacatac |
31648019 |
T |
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| Q |
214 |
ctgcattaatcagaagaaaataatgtcaccttttaattcttgaagttcattaaatagttttctattttctgcaagaatcgtacgataattctcagatgca |
313 |
Q |
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| T |
31648020 |
ctgcattaatcagaagaaaataatgtcaccttttaattcttgaagttcattaaatagttttctattttctgcaagaatcgtacgataattctcggatgca |
31648119 |
T |
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| Q |
314 |
tgcactagtggtttaagatttacacctgagaaagttgaaccacaatgattagagattatataaaccaaagtttgaaaggtgatggagc |
401 |
Q |
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| T |
31648120 |
tgcactagtggtttaagatttacacctgagaaagttgaaccacaatgattagagattatataaaccaaagtttgaaaggtgatggagc |
31648207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 43880043 - 43879914
Alignment:
| Q |
46 |
tctttcccttgcttggagggatttgctacaaccaaatcagattcaccaatacgttccacaatagtttgtttttc-tttttgtccaggaagaaatggtcta |
144 |
Q |
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|||||||||| |||||||||||| | |||||||||||| |||||| || ||| ||||||| |||||||| |||||||| | ||| ||||||||| |
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| T |
43880043 |
tctttcccttctttggagggatttaccacaaccaaatcactttcacctatgtcttctacaatagactgtttttcctttttgtctat-aaggaatggtcta |
43879945 |
T |
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| Q |
145 |
attctacaatatactctaatatttcctgtat |
175 |
Q |
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|||| |||| ||||||| ||||||||||||| |
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| T |
43879944 |
attcgacaaaatactctgatatttcctgtat |
43879914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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