View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_high_15 (Length: 446)
Name: NF3992_high_15
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_15 |
 | |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 39 - 428
Target Start/End: Complemental strand, 33954133 - 33953739
Alignment:
| Q |
39 |
aaggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtagtt---aaaa |
135 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | | |||| |
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|
| T |
33954133 |
aaggactacaaaaagctttttagagttggagaagcatagaaggatttactaccaccttattagaatgtaaataaatcaatagaatgagctgataaaaaaa |
33954034 |
T |
|
| Q |
136 |
ttaaaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatac--aaagaaattacaaaatattacaaaagaattttaattatatacta |
233 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
33954033 |
ttaaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgcta |
33953934 |
T |
|
| Q |
234 |
tacaaaagtcattcaaagaagccaatttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagca |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33953933 |
tacaaaagtcattcaaagaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagca |
33953834 |
T |
|
| Q |
334 |
gccgtctcttcatcgcagtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
428 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
33953833 |
gccgtctcttcatcgcaggttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagatt |
33953739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 33 - 428
Target Start/End: Complemental strand, 33976726 - 33976340
Alignment:
| Q |
33 |
gaacataaggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtagtta |
132 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33976726 |
gaacctaaggactacgaaaagctttttagaactggagaagcata----------ctaccaccttattatcatgtaaataaatcattagaatgagtagtta |
33976637 |
T |
|
| Q |
133 |
aaattaaaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatacaaa-gaaattacaaaatattacaaaagaattttaattatatac |
231 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
33976636 |
aaattaaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgc |
33976537 |
T |
|
| Q |
232 |
tatacaaaagtcattcaaagaagccaatttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33976536 |
tatacaaaagtcattcaaagaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgtgaagcatatgctggaaatcttcccatgtag |
33976437 |
T |
|
| Q |
332 |
cagccgtctcttcatcgcagtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
428 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
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|
| T |
33976436 |
cagccgtctcttcatcgcaggttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaagttgccatgtccagatt |
33976340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 33961448 - 33961045
Alignment:
| Q |
16 |
aaggaacaagaaagtatgaacataaggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatc |
115 |
Q |
| |
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||||||||| ||| | |||| ||||||||||||||| ||||||||| |||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
33961448 |
aaggaacaaaaaaaaaggaacctaaggactacgaaaaactttttagaactggagaagcata----------ctaccagcttattatcttgtaaataaatc |
33961359 |
T |
|
| Q |
116 |
aatagaatgagtagttaaaattaaaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatacaaa-gaaattacaaaatattacaaaa |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33961358 |
attagaatgagtagttaaaattaaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaa |
33961259 |
T |
|
| Q |
215 |
gaattttaattatatactatacaaaagtcattcaaagaagccaatttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctg |
314 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33961258 |
gaattttaattatatgctatacaaaagtcattcaaagaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctg |
33961159 |
T |
|
| Q |
315 |
gaaatcttcccatgtagcagccgtctcttcatcgcagtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaactt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33961158 |
aaaatcttcccatgtagcagccgtctcttcatcgcaggttatcgtcttcaaattctgaagattgaaaactgagaatggcaattcaatacctgcacaactt |
33961059 |
T |
|
| Q |
415 |
gccatgtacagatt |
428 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33961058 |
gccatgtacagatt |
33961045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 132 - 428
Target Start/End: Complemental strand, 33993557 - 33993259
Alignment:
| Q |
132 |
aaaattaaaaattgaatttattgatcgagaatagctaatacaaatcatgtatttatacaaa--gaaattacaaaatattacaaaagaattttaattatat |
229 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
33993557 |
aaaattaaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatat |
33993458 |
T |
|
| Q |
230 |
actatacaaaagtcattcaaagaagccaatttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33993457 |
gctatacaaaagtcattcaaagaagccaatttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgt |
33993358 |
T |
|
| Q |
330 |
agcagccgtctcttcatcgcagtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
428 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
33993357 |
agcagccgtctcttcatcgcaggttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagatt |
33993259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 33983829 - 33983680
Alignment:
| Q |
49 |
aaaagcttttta-gagttggagaagcata--gaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtagtt-----aaaattaaa |
140 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||||| ||||||| | ||||||||||||||| ||||| |||||||||| | | |||| ||| |
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|
| T |
33983829 |
aaaagctttttaagagttggagaaccatatagaaggatttactagct--ttattatcatgtaaaaaaatctatagaatgagaaaattaaaaaaaaaaaaa |
33983732 |
T |
|
| Q |
141 |
aattgaatttattgatcgagaatagctaatacaaatcatgtatttatacaaa |
192 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33983731 |
aattgaatttattgattgagaatagctaatacaaatcatgtagttatacaaa |
33983680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 33983518 - 33983454
Alignment:
| Q |
259 |
tttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttc |
323 |
Q |
| |
|
||||||||| ||| ||| ||| ||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
33983518 |
tttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatcttc |
33983454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 428
Target Start/End: Complemental strand, 33914735 - 33914561
Alignment:
| Q |
251 |
gaagccaatttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
350 |
Q |
| |
|
|||||||||||||||| || | ||| ||| |||||||||| | | ||||| || |||| |||||| |||||||| |||||||||||||||||| || |
|
|
| T |
33914735 |
gaagccaatttaagttgacttcaacttgaggaacctctatagtgagattggaaatcatagattggaaagattcccatgaagcagccgtctcttcatcaca |
33914636 |
T |
|
| Q |
351 |
gtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
428 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||| |||||||||||| || || |||||| | |||||| ||||| |
|
|
| T |
33914635 |
---tatcacctttaaattcgcaagattgacaactgaaaatggcaattcacaacttgtacaactagacatgtatagatt |
33914561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 33943342 - 33943293
Alignment:
| Q |
364 |
aaattctgaagattgacaactgagaatggcaattcaatacctgcacaact |
413 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
33943342 |
aaattctgaagattgacaacggagaatggcaattcacaacttgcacaact |
33943293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 251 - 428
Target Start/End: Complemental strand, 13480 - 13303
Alignment:
| Q |
251 |
gaagccaatttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgca |
350 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
13480 |
gaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcataggctgaaaatcttcccatgaggcagctgtctcttcatcgca |
13381 |
T |
|
| Q |
351 |
gtttatcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
428 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13380 |
agttatcgtcttcaagttctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtacagatt |
13303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 256 - 428
Target Start/End: Original strand, 8275516 - 8275688
Alignment:
| Q |
256 |
caatttaagttaacatgaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgcagttta |
355 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8275516 |
caatttaagttaacatcaacatgaggaacctctatcttcatactaggaagcgtatgatggaaatcttcccatgtagcagccgtctcttcatcgcaggttt |
8275615 |
T |
|
| Q |
356 |
tcgtcttcaaattctgaagattgacaactgagaatggcaattcaatacctgcacaacttgccatgtacagatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| | ||||||| |||||||||||||||||| ||||| |
|
|
| T |
8275616 |
tcgtcttcaaattctgaagattgacatctgaaaatggaagctcaatacttgcacaacttgccatgtatagatt |
8275688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 64 - 235
Target Start/End: Original strand, 8275222 - 8275395
Alignment:
| Q |
64 |
ttggagaagcatagaagggtttactaccaccttattatcatgtaaataaatcaatagaatgagtag-ttaaaattaaaaattgaatttattgatcgagaa |
162 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||| ||| ||||||| |||| |
|
|
| T |
8275222 |
ttggagaagcataggaggatttactagcaccttattatcatgtaaacaaatctatagaatgagtagataaaaattaaaaatttaatctattgattaagaa |
8275321 |
T |
|
| Q |
163 |
tagctaatacaaatcatgtatttatac-aaagaaattacaaaatattacaaaagaattttaattatatactata |
235 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
8275322 |
tagctaatacaaatcatgcatttatacaaaagaatttacaaaagattacaaaagaattttagttatatactata |
8275395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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