View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_high_17 (Length: 439)

Name: NF3992_high_17
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_high_17
NF3992_high_17
[»] chr1 (8 HSPs)
chr1 (20-410)||(33856879-33857273)
chr1 (20-410)||(33923650-33924044)
chr1 (192-428)||(47872396-47872640)
chr1 (21-83)||(45191206-45191268)
chr1 (29-72)||(49547593-49547636)
chr1 (272-302)||(44261733-44261763)
chr1 (108-144)||(47872307-47872343)
chr1 (75-159)||(49444127-49444211)
[»] chr4 (2 HSPs)
chr4 (32-90)||(55768162-55768220)
chr4 (32-90)||(55832418-55832476)
[»] chr3 (7 HSPs)
chr3 (21-84)||(14961252-14961314)
chr3 (21-84)||(14961483-14961546)
chr3 (108-149)||(14961558-14961599)
chr3 (21-50)||(532626-532655)
chr3 (21-50)||(565209-565238)
chr3 (21-98)||(574896-574973)
chr3 (21-57)||(542974-543010)
[»] chr5 (1 HSPs)
chr5 (278-330)||(31264611-31264663)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 33856879 - 33857273
Alignment:
Q  20 cagggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccatttcaacttgagatgaatgattagtagtttat 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33856879 cagggcatacatatttaattttgggattcaataccttcctgcgaaaggaacatcaaatcacacttccatttcaacttgagatgaatgattagtagtttat 33856978  T
Q  120 gattattaattgcacttcacatatgtttatgattttctgccgnnnnnnnngcttgctata--tatatgccatggttctaccatatgccgcaatgccatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  33856979 gattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaatgccatga 33857078  T
Q  218 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33857079 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 33857178  T
Q  318 atttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgtt---gaagaaaaactaattgatgatagaattttt 410  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  33857179 atttagagactaatttgatta-aaaactaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaattttt 33857273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 33924044 - 33923650
Alignment:
Q  20 cagggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccatttcaacttgagatgaatgattagtagtttat 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33924044 cagggcatacatatttaattttgggattcaataccttcctgcgaaaggaacatcaaatcacacttccatttcaacttgagatgaatgattagtagtttat 33923945  T
Q  120 gattattaattgcacttcacatatgtttatgattttctgccgnnnnnnnngcttgctatatatat--gccatggttctaccatatgccgcaatgccatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  33923944 gattattaattgcacttcacatatgtttatgattttctgccgttttttttgcttgctatatatatatgccatggttctaccatatgctgcaatgccatga 33923845  T
Q  218 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33923844 tttttggtttgttgccatccaccataatattagtcctccagttgtatgtatgacatttaaattgtttaatctttgttggattgagacagacggagtccta 33923745  T
Q  318 atttagagactaatttgattaggttactaattgatggattaagttgtgacacactgcattgtt---gaagaaaaactaattgatgatagaattttt 410  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  33923744 atttagagactaatttgatta-aaaactaattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaattgatgatagaattttt 33923650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 428
Target Start/End: Original strand, 47872396 - 47872640
Alignment:
Q  192 ttctaccatatgccgcaatgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtat------gacatttaaattgttta 285  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||| ||| |||| ||| |||       | |||||| ||||| |    
T  47872396 ttctaccatatgccgtaatgccatgatttttggtttgtcgccatccaacataacattagttctctagttatatatataagtggcatatttaatttgttca 47872495  T
Q  286 atctttgttggattgagacagacggagtcctaatttagagactaatttgattaggtt----actaattgatggattaagttgtgacacactgcattgttg 381  Q
    |||||||||||||| ||    | |||||||||||||||||||||||||||| |  ||    || | |||||||||||||||||||||| |||||||||||    
T  47872496 atctttgttggattaagtgtaatggagtcctaatttagagactaatttgatgaaattttgcacaatttgatggattaagttgtgacactctgcattgttg 47872595  T
Q  382 aagaaaaactaattgatgatagaatttttccacgtaatgaactgatg 428  Q
    |||||  ||  || |||||||||| |||  || ||||||||||||||    
T  47872596 aagaactac--atcgatgatagaaatttgtcatgtaatgaactgatg 47872640  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 45191206 - 45191268
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacact 83  Q
    ||||||| || ||||||||||||| |||||| ||||||||| |||||||||| ||||||||||    
T  45191206 agggcatgcaaatttaattttggggttcaatgccttcctgccaaaggaacatcaaatcacact 45191268  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 49547636 - 49547593
Alignment:
Q  29 cagatttaattttgggattcaataccttcctgcgaaaggaacat 72  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||    
T  49547636 cagatttaattttgggattcaacaccttactgccaaaggaacat 49547593  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 44261763 - 44261733
Alignment:
Q  272 atttaaattgtttaatctttgttggattgag 302  Q
    |||||||||||||||||||||||||||||||    
T  44261763 atttaaattgtttaatctttgttggattgag 44261733  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 47872307 - 47872343
Alignment:
Q  108 ttagtagtttatgattattaattgcacttcacatatg 144  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  47872307 ttagtagtttatgattattcattgcacttctcatatg 47872343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 49444211 - 49444127
Alignment:
Q  75 aatcacacttccatttcaacttgagatgaatgattagtagtttatgattattaattgcacttcacatatgtttatgattttctgc 159  Q
    ||||||||||||||||||| ||||||  | || |||||||||||| | |||| |||| | ||| ||||| || ||| ||||||||    
T  49444211 aatcacacttccatttcaatttgagaccactggttagtagtttatcactattcattgtaattctcatatcttgatgcttttctgc 49444127  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 55768162 - 55768220
Alignment:
Q  32 atttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccattt 90  Q
    |||||||||||||||||||| ||||||||| | ||||||||  ||||||||||||||||    
T  55768162 atttaattttgggattcaatgccttcctgccagaggaacatcgaatcacacttccattt 55768220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 55832418 - 55832476
Alignment:
Q  32 atttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccattt 90  Q
    |||||||||||||||||||| ||||||||| | ||||||||  ||||||||||||||||    
T  55832418 atttaattttgggattcaatgccttcctgccagaggaacatcgaatcacacttccattt 55832476  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 14961252 - 14961314
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacactt 84  Q
    |||||||||| | ||||||| ||||||||| |||||||||| |||||||||| |||||||||||    
T  14961252 agggcatacaaacttaattt-gggattcaacaccttcctgccaaaggaacatcaaatcacactt 14961314  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 14961483 - 14961546
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacactt 84  Q
    ||||||||||||| |||||||||||||||| | |||||||| ||||||| ||| || |||||||    
T  14961483 agggcatacagatctaattttgggattcaacatcttcctgcaaaaggaatattgaaccacactt 14961546  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 14961558 - 14961599
Alignment:
Q  108 ttagtagtttatgattattaattgcacttcacatatgtttat 149  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  14961558 ttagtagtttatgattattcattgcatttcacatatgtttat 14961599  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 532655 - 532626
Alignment:
Q  21 agggcatacagatttaattttgggattcaa 50  Q
    ||||||||||||||||||||||||||||||    
T  532655 agggcatacagatttaattttgggattcaa 532626  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 565238 - 565209
Alignment:
Q  21 agggcatacagatttaattttgggattcaa 50  Q
    ||||||||||||||||||||||||||||||    
T  565238 agggcatacagatttaattttgggattcaa 565209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 574973 - 574896
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttcctgcgaaaggaacattaaatcacacttccatttcaacttga 98  Q
    ||||||||| ||||||||||||||||||||  ||||| ||| |||| || ||  |||||||| |||| |||| |||||    
T  574973 agggcatacggatttaattttgggattcaacgccttcttgccaaagaaatatcgaatcacacctccagttcagcttga 574896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 543010 - 542974
Alignment:
Q  21 agggcatacagatttaattttgggattcaataccttc 57  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  543010 agggcataccgatttaattttgggattcaatgccttc 542974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 31264611 - 31264663
Alignment:
Q  278 attgtttaatctttgttggattgagacagacggagtcctaatttagagactaa 330  Q
    |||||| ||||||||||||| ||||||| | |||||||||||||  |||||||    
T  31264611 attgttcaatctttgttggaatgagacaaatggagtcctaattttaagactaa 31264663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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