View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_high_2 (Length: 747)

Name: NF3992_high_2
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_high_2
NF3992_high_2
[»] chr2 (2 HSPs)
chr2 (154-674)||(32986120-32986662)
chr2 (24-117)||(32986661-32986755)
[»] chr5 (3 HSPs)
chr5 (682-735)||(30441314-30441367)
chr5 (681-736)||(37720032-37720087)
chr5 (672-737)||(9263661-9263726)
[»] chr4 (1 HSPs)
chr4 (681-734)||(34703771-34703824)
[»] chr1 (5 HSPs)
chr1 (681-734)||(28549377-28549430)
chr1 (681-734)||(41866988-41867041)
chr1 (681-737)||(25867306-25867362)
chr1 (681-714)||(4328863-4328896)
chr1 (681-734)||(35161958-35162011)
[»] chr7 (4 HSPs)
chr7 (681-737)||(20389918-20389974)
chr7 (685-732)||(33865605-33865651)
chr7 (680-734)||(34575601-34575655)
chr7 (681-734)||(13946651-13946704)
[»] chr6 (7 HSPs)
chr6 (681-737)||(4434991-4435047)
chr6 (670-737)||(2314484-2314551)
chr6 (685-734)||(11074870-11074918)
chr6 (681-737)||(11178362-11178418)
chr6 (681-737)||(28057050-28057106)
chr6 (672-735)||(32444469-32444532)
chr6 (672-706)||(7536967-7537001)
[»] chr3 (4 HSPs)
chr3 (681-737)||(46595792-46595848)
chr3 (681-732)||(30766053-30766104)
chr3 (681-734)||(4865124-4865177)
chr3 (681-734)||(55041525-55041578)
[»] chr8 (1 HSPs)
chr8 (681-734)||(1662597-1662650)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 154 - 674
Target Start/End: Complemental strand, 32986662 - 32986120
Alignment:
Q  154 tttatctcatatttctaaggtattcaaatctcacgtttgatgcagtctatagactaaatgtttgaactcctgataat---------------------cc 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||    
T  32986662 tttatcccatatttctaaggtattcaaatctcacgtttgatgcagtctatagactaaatgtttgaactcctgataataatatagagatttggctcaatcc 32986563  T
Q  233 aatctcaagttaaagagtgatatattagacaaaatatggtgtgtttataaatggagataatcatcatcagttttgtaaggatgagttatgttccaaattc 332  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  32986562 aatctcaagttaaagagtgatatattagataaaatatggtgtgtttataaatggagacaatcatcatcagttttgtaaggatgaattatgttccaaattc 32986463  T
Q  333 aataagatattcgagctttactatttagtttttgttatcagacccattcagtgtttatgttcatgaatcaagctcaatagtgttggttataaggatgtgt 432  Q
    || |||||||   ||||||||||||| ||||||| |||||||||||| ||  ||||||||  ||||||||||||||||||| ||||| ||||||||||||    
T  32986462 aacaagatatcaaagctttactatttggtttttgctatcagacccatccaccgtttatgtctatgaatcaagctcaatagtattggtcataaggatgtgt 32986363  T
Q  433 atgttaaa-gatgagttatactctaaatagaaacaacaatttacttttagttagatcgtggtctaatcgattagtgaagattcctaattgattagtagag 531  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32986362 atgttaaaagatcagttatactctaaatagaaacaacaatttacttttagttagatcgtggtctaatcgattagtgaagattcctaattgattagtagag 32986263  T
Q  532 tagaaacaagattgtagctgactcattgcgataattaattagccaagaagcctaatagcttattcctaaccgattagaatagaaattcaaattgattagc 631  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32986262 tagaaacaagattgtagctgactcattgggataatcaattagccaagaatcctaatagcttattcctaaccggttagaatagaaattcaaattgattagc 32986163  T
Q  632 tatcgcaaaaaactaacattttttaattaactatcatgtgtat 674  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  32986162 tatcgcaaaaaactaacattttttaatttactatcatgtgtat 32986120  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 32986755 - 32986661
Alignment:
Q  24 aacaaaat-attttataataatagtttctctgtaccttctagagtgcaacaattgtgtagcaacaaacaaacgacactaaaattgattgagaatt 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32986755 aacaaaatcattttataataatagtttctctgtaccttctagagtgcaacaattgtgtagcaacaaacaaacgacactaaaattgattgagaatt 32986661  T

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Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 682 - 735
Target Start/End: Complemental strand, 30441367 - 30441314
Alignment:
Q  682 tattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatccta 735  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30441367 tattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaaaccta 30441314  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 681 - 736
Target Start/End: Complemental strand, 37720087 - 37720032
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctat 736  Q
    |||||||||||||||||  ||||||||| |||| || |||||||||||||||||||    
T  37720087 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctat 37720032  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 737
Target Start/End: Complemental strand, 9263726 - 9263661
Alignment:
Q  672 tatcttatattattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||| ||| |||||||||||||  ||||||||| |||| || || |||| ||||||||||||    
T  9263726 tatcttatcttaatatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 9263661  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 681 - 734
Target Start/End: Original strand, 34703771 - 34703824
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  34703771 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 34703824  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 681 - 734
Target Start/End: Complemental strand, 28549430 - 28549377
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  28549430 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 28549377  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 681 - 734
Target Start/End: Original strand, 41866988 - 41867041
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  41866988 ttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 41867041  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 681 - 737
Target Start/End: Original strand, 25867306 - 25867362
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||||||||||||  ||||||||| |||| || |||||||||||||| |||||    
T  25867306 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaattctatg 25867362  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 714
Target Start/End: Complemental strand, 4328896 - 4328863
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaac 714  Q
    ||||||||||||||||| ||||||||||||||||    
T  4328896 ttattatctaatcctaaagtacaatgcacacaac 4328863  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 734
Target Start/End: Original strand, 35161958 - 35162011
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  35161958 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 35162011  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 737
Target Start/End: Original strand, 20389918 - 20389974
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||||||||||||  ||||||||| |||| || ||||||||||||||||||||    
T  20389918 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 20389974  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 732
Target Start/End: Original strand, 33865605 - 33865651
Alignment:
Q  685 tatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatc 732  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  33865605 tatctaatcctaatgtacaatgcacacaagacct-aaaaaccctaatc 33865651  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 680 - 734
Target Start/End: Original strand, 34575601 - 34575655
Alignment:
Q  680 attattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    ||||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  34575601 attattatctaatcctaacctacaatgcacacaacatttgcaaaaccctaatcct 34575655  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 734
Target Start/End: Original strand, 13946651 - 13946704
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  13946651 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 13946704  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 737
Target Start/End: Original strand, 4434991 - 4435047
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||||||||||||  ||||||||| |||| || ||||||||||||||||||||    
T  4434991 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 4435047  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 670 - 737
Target Start/End: Complemental strand, 2314551 - 2314484
Alignment:
Q  670 tgtatcttatattattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||||| |||||||||||||||||  ||||||||| |||| || || |||| ||||||||||||    
T  2314551 tgtatcttatcttattatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 2314484  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 734
Target Start/End: Original strand, 11074870 - 11074918
Alignment:
Q  685 tatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  11074870 tatctaatcctaatgtacaatgcacacaagacct-aaaaaccctaatcct 11074918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 681 - 737
Target Start/End: Original strand, 11178362 - 11178418
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||||||||||||  ||||||||| |||| || || |||||||||||||||||    
T  11178362 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatg 11178418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 681 - 737
Target Start/End: Original strand, 28057050 - 28057106
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||||||||||||  |||| |||| |||| || ||||||||||||||||||||    
T  28057050 ttattatctaatcctaaactacagtgcaaacaaaacatctaaaaccctaatcctatg 28057106  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 672 - 735
Target Start/End: Original strand, 32444469 - 32444532
Alignment:
Q  672 tatcttatattattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatccta 735  Q
    |||||||| |||||||||||||||||  ||||||||| |||| || |  |||||||||||||||    
T  32444469 tatcttatcttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatccta 32444532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 672 - 706
Target Start/End: Original strand, 7536967 - 7537001
Alignment:
Q  672 tatcttatattattatctaatcctaatgtacaatg 706  Q
    |||||||| ||||||||||||||||||||||||||    
T  7536967 tatcttatcttattatctaatcctaatgtacaatg 7537001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 737
Target Start/End: Complemental strand, 46595848 - 46595792
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcctatg 737  Q
    |||||||||||||||||  ||||||||| |||| || ||||||||||||||||||||    
T  46595848 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 46595792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 732
Target Start/End: Complemental strand, 30766104 - 30766053
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatc 732  Q
    |||||||||||||||||  ||||||||||||||  | |||||||||||||||    
T  30766104 ttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatc 30766053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 734
Target Start/End: Original strand, 4865124 - 4865177
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  4865124 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 4865177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 734
Target Start/End: Complemental strand, 55041578 - 55041525
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  55041578 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 55041525  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 734
Target Start/End: Complemental strand, 1662650 - 1662597
Alignment:
Q  681 ttattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaatcct 734  Q
    |||||||||||||||||  ||||||||||||||||  |  ||||||||||||||    
T  1662650 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 1662597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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