View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_high_23 (Length: 402)

Name: NF3992_high_23
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_high_23
NF3992_high_23
[»] chr8 (15 HSPs)
chr8 (13-386)||(17779715-17780088)
chr8 (132-330)||(17800814-17801012)
chr8 (165-386)||(17822156-17822377)
chr8 (132-385)||(17691598-17691851)
chr8 (185-386)||(17717320-17717518)
chr8 (129-386)||(17813245-17813502)
chr8 (270-322)||(17789075-17789127)
chr8 (30-88)||(17800560-17800618)
chr8 (131-367)||(17851815-17852048)
chr8 (346-386)||(17789156-17789196)
chr8 (131-386)||(17868838-17869090)
chr8 (13-56)||(17788931-17788974)
chr8 (185-367)||(17920625-17920804)
chr8 (131-229)||(17817436-17817534)
chr8 (131-224)||(17843300-17843393)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 17779715 - 17780088
Alignment:
Q  13 aatatgccattacaaacatcacattaatcaattataaagatgaacacttaagccaacccaatgcaataagccattaacttatttgttacattcattacga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17779715 aatatgccattacaaacatcacattaatcaattataaagatgaacacttaagccaacccaatgcaataagccattaacttatttgttacattcattacga 17779814  T
Q  113 cttatatagctatctttgccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17779815 cttatatagctatctttgccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatgtcctcatt 17779914  T
Q  213 gatcttctcatattcaactgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagcttaaagaccttgtagtgctcatcaata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17779915 gatcttctcatattcaactgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagcttaaagaccttgtagtgctcatcaata 17780014  T
Q  313 tctccaccaaagagcttgaaaatgannnnnnngttctgttcatcaacttcttcaagactctcatgacatgtgtg 386  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  17780015 tctccaccaaagagcttgaaaatgatttttttgttctgttcatcaacttcttcaagactctcatgacatgtgtg 17780088  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 132 - 330
Target Start/End: Original strand, 17800814 - 17801012
Alignment:
Q  132 cttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaact 231  Q
    |||| ||||||||  ||||||||||| || ||||||||  ||||| |||||  ||||||||||||||||||||||||| ||||||||| ||||||||||     
T  17800814 cttgacaagatgagcatcaatatctctagtacatttgcataagtaatccatccagccatttggagggtcaatatcctcgttgatcttcacatattcaaca 17800913  T
Q  232 gtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttg 330  Q
    |||||||||  ||||| ||| ||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  17800914 gtccatttaactgcagaagtcccatcacccttatcaattacttcaatgatgagcttaaagtccttatagtgctcatcaatatctccaccaaagagcttg 17801012  T

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Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 165 - 386
Target Start/End: Original strand, 17822156 - 17822377
Alignment:
Q  165 tttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaactgtccatttagatgcagcagtgccatcaccctta 264  Q
    |||| ||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||   |||||| | ||| || | |||    
T  17822156 tttggcaaagtagtccatatagccatttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagcagcatttccaccagcttta 17822255  T
Q  265 tcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttgaaaatgannnnnnngttctgttcatcaacttctt 364  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||       ||| |||| |||||  ||||    
T  17822256 tcaattacttcaaggatgagcttaaagaccttatagtgttcatcaatatctccaccaaagagcttgaaagtgattttcttgttttgtttatcaagatctt 17822355  T
Q  365 caagactctcatgacatgtgtg 386  Q
    ||| | ||||||||||||||||    
T  17822356 caataatctcatgacatgtgtg 17822377  T

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Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 132 - 385
Target Start/End: Original strand, 17691598 - 17691851
Alignment:
Q  132 cttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaact 231  Q
    |||| ||||||||  |||||| |||||||  ||||||| || |||||||||  | | ||||||||| ||||||||||||||||||||||||||||||||     
T  17691598 cttgacaagatgagcatcaatgtctcgagtgcatttgctaaggtattccatccaactatttggaggttcaatatcctcattgatcttctcatattcaaca 17691697  T
Q  232 gtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttga 331  Q
    |||||||||   | || |||||||||| |||||||||||||||||| ||| |||||||||||||| || ||||||||||| ||| ||||||||| ||||     
T  17691698 gtccatttaacagaagtagtgccatcagccttatcaattacttcaatgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgt 17691797  T
Q  332 aaatgannnnnnngttctgttcatcaacttcttcaagactctcatgacatgtgt 385  Q
     || ||       ||||| |||||||| |||||||| ||| |||||||||||||    
T  17691798 gaacgatttttttgttcttttcatcaatttcttcaaaactttcatgacatgtgt 17691851  T

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Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 185 - 386
Target Start/End: Original strand, 17717320 - 17717518
Alignment:
Q  185 agccatttggagggtcaatatcctcattgatcttctcatattcaactgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataag 284  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |  ||  ||||||||||||| ||||||||||||| || ||| |     
T  17717320 agccatttggtgggtcaatatcctcattgatcttctgatattcaacagtccattttgcagctccagtgccatcaccattatcaattacttgaatgatcaa 17717419  T
Q  285 cttaaagaccttgtagtgctcatcaatatctccaccaaagagcttgaaaatgannnnnnngttctgttcatcaacttcttcaagactctcatgacatgtg 384  Q
     ||||||||||| |||||||||||||| |||||||| |||||||||||| |||       ||||||||||||||||||    | ||||||||||||||||    
T  17717420 attaaagaccttatagtgctcatcaatgtctccaccgaagagcttgaaagtgatttttttgttctgttcatcaacttcg---atactctcatgacatgtg 17717516  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 386
Target Start/End: Original strand, 17813245 - 17813502
Alignment:
Q  129 tgccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattca 228  Q
    ||||||| ||||||||  ||||||||||| || |  |||  ||| ||| |||||  ||||||| |||| |||||||||||||||||||||| ||||||||    
T  17813245 tgccttgacaagatgagcatcaatatctctagtaagtttagcaacgtagtccatccagccattaggagcgtcaatatcctcattgatcttcacatattca 17813344  T
Q  229 actgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagct 328  Q
    |  |||||||||   |||||| | |  ||||  |||||||||| |||||  || || |||||  |||| |||| |||| ||||||||||||| |||||||    
T  17813345 atagtccatttaatggcagcactactgtcacttttatcaattatttcaataatgagtttaaaatccttatagttctcaccaatatctccaccgaagagct 17813444  T
Q  329 tgaaaatgannnnnnngttctgttcatcaacttcttcaagactctcatgacatgtgtg 386  Q
    || || |||        |||| ||||||||||||||||| ||||||||||||||||||    
T  17813445 tgtaactgagttttttattcttttcatcaacttcttcaacactctcatgacatgtgtg 17813502  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 17789075 - 17789127
Alignment:
Q  270 tacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaa 322  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||||||||    
T  17789075 tacttcaagaatgagcttaaagaccttatagtgctcatcaatatctccaccaa 17789127  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 17800560 - 17800618
Alignment:
Q  30 atcacattaatcaattataaagatgaacacttaagccaacccaatgcaataagccatta 88  Q
    |||||||| || | |||||||||||||||||||||||||||| ||| | ||||||||||    
T  17800560 atcacatttattatttataaagatgaacacttaagccaaccccatggattaagccatta 17800618  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 367
Target Start/End: Original strand, 17851815 - 17852048
Alignment:
Q  131 ccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaac 230  Q
    ||||| ||||||||  ||||||||||| ||  | ||||| || ||| |||||  | ||||||||||  |||| || ||||||| |||||||||| ||||     
T  17851815 ccttgacaagatgaccatcaatatctctagtgcttttgctaaggtagtccatccaaccatttggagtatcaacattctcattgttcttctcataatcaat 17851914  T
Q  231 tgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttg 330  Q
     |||||| ||   |||| ||| |||| | ||||   ||| ||||| | ||| |||||||||||||| |||   |  ||||||||||||||||| ||||||    
T  17851915 agtccatctaagagcagaagttccattatccttgataatcacttctaagatgagcttaaagaccttatag---ttttcaatatctccaccaaaaagcttg 17852011  T
Q  331 aaaatgannnnnnngttctgttcatcaacttcttcaa 367  Q
    ||| |||       |||||| ||||||||||||||||    
T  17852012 aaagtgatttttttgttctgctcatcaacttcttcaa 17852048  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 17789156 - 17789196
Alignment:
Q  346 ttctgttcatcaacttcttcaagactctcatgacatgtgtg 386  Q
    ||| |||||||||||||||||| ||||||||||||||||||    
T  17789156 ttcagttcatcaacttcttcaacactctcatgacatgtgtg 17789196  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 386
Target Start/End: Original strand, 17868838 - 17869090
Alignment:
Q  131 ccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaac 230  Q
    ||||| ||||||||  ||||||||||| ||  | ||||| || ||| |||||  | ||||||||||  ||||||||||||||  |||||||||| ||||     
T  17868838 ccttgacaagatgaccatcaatatctctagtgcttttgctaaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaat 17868937  T
Q  231 tgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagcttaaagaccttgtagtgctcatcaatatctccaccaaagagcttg 330  Q
      ||||| ||   |||| | | |||||| |||| | ||  ||||| | ||| |||||||| ||||| ||||  |||   |||||||||||||| ||||||    
T  17868938 actccatctaacagcagaacttccatcagccttgttaagcacttctaagatgagcttaaataccttatagttttca---atatctccaccaaacagcttg 17869034  T
Q  331 aaaatgannnnnnngttctgttcatcaacttcttcaagactctcatgacatgtgtg 386  Q
     || |||       |||||| |||||||||||||||| ||||||||  ||||||||    
T  17869035 taagtgatttttttgttctgatcatcaacttcttcaacactctcattgcatgtgtg 17869090  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 17788931 - 17788974
Alignment:
Q  13 aatatgccattacaaacatcacattaatcaattataaagatgaa 56  Q
    |||||||||||||||||||| ||||||| | |||||||||||||    
T  17788931 aatatgccattacaaacatcgcattaattacttataaagatgaa 17788974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 367
Target Start/End: Original strand, 17920625 - 17920804
Alignment:
Q  185 agccatttggagggtcaatatcctcattgatcttctcatattcaactgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataag 284  Q
    ||||||||||||  ||||  ||||||||| |||||||||| ||||  |||||| ||   |||| | | |||||  |||| | ||  ||||| | ||| ||    
T  17920625 agccatttggagtctcaacttcctcattgttcttctcataatcaatagtccatctaacagcagaacttccatctgccttgttaagcacttctaagatgag 17920724  T
Q  285 cttaaagaccttgtagtgctcatcaatatctccaccaaagagcttgaaaatgannnnnnngttctgttcatcaacttcttcaa 367  Q
    ||||||||||||||||   |  ||||||||||||||||| ||||||||| |||       |||||| ||||||||||||||||    
T  17920725 cttaaagaccttgtag---ttttcaatatctccaccaaacagcttgaaagtgatttttttgttctgctcatcaacttcttcaa 17920804  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 17817436 - 17817534
Alignment:
Q  131 ccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcatattcaa 229  Q
    ||||| ||||||||  ||||||||||| ||  ||||||| || ||| |||||  ||||||| ||||  ||||||||||||||  |||||||||| ||||    
T  17817436 ccttgacaagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcataatcaa 17817534  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 17843300 - 17843393
Alignment:
Q  131 ccttggcaagatgattatcaatatctcgagcacatttgccaaagtattccatgtagccatttggagggtcaatatcctcattgatcttctcata 224  Q
    ||||| ||||||||  ||||||||||| ||  ||||||| || ||| |||||  ||||||| ||||  ||||||||||||||  ||||||||||    
T  17843300 ccttgacaagatgaccatcaatatctctagtgcatttgctaaggtagtccatccagccattgggagtatcaatatcctcatttttcttctcata 17843393  T

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