View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_27 (Length: 374)
Name: NF3992_high_27
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 35922603 - 35922960
Alignment:
| Q |
1 |
tcatcttgttctcaacttggtttcaacatatcataagtttctaactatttatagatgaaaaagtgacaattttgcaggacttatttggttgtgcttattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35922603 |
tcatcttgttctcaacttggtttcaacatatcataagtttctaacaatttatagatgaaaaagtgacaattttggaggacttatttggttgtgcttattg |
35922702 |
T |
|
| Q |
101 |
gagtcatgtgaatgaaacaagtgttaacagcacaattgaccaatgactatgcaatattgatcagccggctgaatgtaagtgattttccttgtttcccttt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922703 |
gagtcatgtgaatgaaacaagtgttaacagtacaattgaccaatgactatgcaatattgatcagccggctgaatgtaagtgattttccttgtttcccttt |
35922802 |
T |
|
| Q |
201 |
ttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgtggttt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922803 |
ttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttattgttgtggttt |
35922902 |
T |
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| Q |
301 |
atgcagtgtcttcattctagtttctaagagcatctgtaattgggttactgggaatatg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922903 |
atgcagtgtcttcattctagtttctaagagcatctgtaattgggttactgggaatatg |
35922960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 35911947 - 35912247
Alignment:
| Q |
1 |
tcatcttgttctcaacttggtttcaacatatcataagtttctaactatttatagatgaaaa--agtgacaattttgca-ggacttatttggttgtgctta |
97 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |
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| T |
35911947 |
tcatcttgttctcaacttggcttcaatatatcataagtttctaactatttatagatgaaaaacagtggcaattttgcagggacttatttggttgtgcttg |
35912046 |
T |
|
| Q |
98 |
ttggagtcatgtgaatgaaaca--agtgttaacagcacaattgaccaatgactatgcaatattgatcagccggctga------atgtaagtgattttcct |
189 |
Q |
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|| || ||||||||| |||| | || |||||||| || |||||||||||| |||| |||| |||||||||||| | |||| |||| | || |
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| T |
35912047 |
tttgaatcatgtgaaagaaataagagagttaacagtactgttgaccaatgaccatgc---attggtcagccggctgaccgaccaggtaatggattgttct |
35912143 |
T |
|
| Q |
190 |
tgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaacttat |
289 |
Q |
| |
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||||||| ||||||||||||||| |||||||| ||||||||| ||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
35912144 |
tgtttccgtttttctagaatcat-gtatcaagttatttaacattttagtactatgtgattaactttgaaagttaatg-gatgtttgttcctctaacttat |
35912241 |
T |
|
| Q |
290 |
tgttgt |
295 |
Q |
| |
|
|||||| |
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|
| T |
35912242 |
tgttgt |
35912247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 35916337 - 35916459
Alignment:
| Q |
1 |
tcatcttgttctcaacttggtttcaacatatcataagtttctaactatttatagatgaaaa--agtgacaattttgcaggacttatttggttgtgcttat |
98 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||| | |
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| T |
35916337 |
tcatcttgttctcaacttggtttcaatatatcataagtttctaactatttatagatgaaaaacattgacaattttgaaggacttatttggttgttcttgt |
35916436 |
T |
|
| Q |
99 |
tggagtcatgtgaatgaaacaag |
121 |
Q |
| |
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||||| |||||||| |||||||| |
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| T |
35916437 |
tggagccatgtgaaagaaacaag |
35916459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 35936130 - 35936245
Alignment:
| Q |
189 |
ttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaactta |
288 |
Q |
| |
|
|||||||||| ||| ||||||||| | |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||| |
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| T |
35936130 |
ttgtttccctgtttgtagaatcat---aacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcctctaactta |
35936226 |
T |
|
| Q |
289 |
ttgttgtggtttatgcagt |
307 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
35936227 |
ttgttgtggttgatgcagt |
35936245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 305
Target Start/End: Original strand, 35929457 - 35929593
Alignment:
| Q |
170 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatg--- |
266 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
35929457 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgata |
35929553 |
T |
|
| Q |
267 |
-atatatttgttcctctaacttattgttgtggtttatgca |
305 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||| |
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| T |
35929554 |
aatatattttgtcctctaacttattgttgccgtttatgca |
35929593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 307
Target Start/End: Original strand, 35941655 - 35941769
Alignment:
| Q |
188 |
cttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatgatatatttgttcctctaactt |
287 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||| |||||| |||||||| |||||||||||| |
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| T |
35941655 |
cttgttttcctttttctagaatcatg-tatcaagttatttaacaatttagcactttgtaattaacttt----gttaattatatattttttcctctaactt |
35941749 |
T |
|
| Q |
288 |
attgttgtggtttatgcagt |
307 |
Q |
| |
|
||| || || || ||||||| |
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|
| T |
35941750 |
atttttatgattgatgcagt |
35941769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 35916550 - 35916641
Alignment:
| Q |
172 |
aatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaacaatttagaactttgtgattaactttgaaagttaatg |
266 |
Q |
| |
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|||||||| |||| || |||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
35916550 |
aatgtaagggattgtcattgtttccctttttctagaatcat---atcaagttatttaacgttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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