View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_31 (Length: 348)
Name: NF3992_high_31
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 327
Target Start/End: Complemental strand, 1003245 - 1002931
Alignment:
| Q |
14 |
ataatactcctcctcctggaaaaaccaataatatataaatacatttccatattccaacttcataacacacacttcacactttcacgtaacaaacattaca |
113 |
Q |
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| T |
1003245 |
ataatactcctcctcctggaaaaaccaata---tataaatacatttccatattccaacttcataacacacacttcacactttcacgtaacaaacattaca |
1003149 |
T |
|
| Q |
114 |
ataccttaacgataatattaacaagaaacacaacacttactaacaacgctgtttgaaggaa-aaaacaacacttacaacgttgtttggaaacaaaaacac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
1003148 |
ataccttaacgataatattaacaagaaacacaacacttacttacaacgccgtctgaaggaaaaaaacaacagttacaacgttgtttggaaacaaaaacac |
1003049 |
T |
|
| Q |
213 |
acaaccaaatggtgaaactcgaat---caactcttgaatcctccgaccttgcttttctcgaatcaattcaacgctccctcctcgaagaccaccatgactt |
309 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1003048 |
acaaccaaatggtgaaactcgaatctacaactcttgaatcctccgaccttgcttttctcgaatcaattcaacgctacctcctcgaagaccaccatgactt |
1002949 |
T |
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| Q |
310 |
caaccctctcaccgccat |
327 |
Q |
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|||||||||||| ||||| |
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| T |
1002948 |
caaccctctcacggccat |
1002931 |
T |
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