View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_33 (Length: 335)
Name: NF3992_high_33
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 47440744 - 47440543
Alignment:
| Q |
10 |
caatgcgatggagacttttgcctaggggcgaagctttgctctacctttggctatccaaaaaatattttttatttgaataatttagtataatgtgtaagta |
109 |
Q |
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| T |
47440744 |
caatgcaatggagacttatgcctaggggcgaagctttgctctacctttggctatccaaaaaatattttttatttgaataatttagtataatgtgtaagta |
47440645 |
T |
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| Q |
110 |
actatccaaataatacatatatatttaactaccacaaattagtttatttatnnnnnnnnnnnnctaatagaaaaggaaaattaaaagatacccacttgta |
209 |
Q |
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| T |
47440644 |
actatccaaataatacatatatatttaactaccacaaattagtttatttat----aaaaaaaactaatagaaaaggaaaattaaaagatacccacttgta |
47440549 |
T |
|
| Q |
210 |
tgacac |
215 |
Q |
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|||||| |
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| T |
47440548 |
tgacac |
47440543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 47440555 - 47440461
Alignment:
| Q |
235 |
acttgtatgacacttttaatcatttaaactattacaaaaagaattttgttnnnnnnnnnnnnnttcaattagttttaatggatccaacaaatact |
329 |
Q |
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| T |
47440555 |
acttgtatgacacttttaatcatttaaactattacaaaaagaattttgctaaaaataaaaaatttcaattagttttaatggatccaacaaatact |
47440461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 20861208 - 20861264
Alignment:
| Q |
73 |
attttttatttgaataatttagtataatgtgtaagtaactatccaaataatacatat |
129 |
Q |
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| T |
20861208 |
attttttatttaaataagttagtatattttgtaattaactattcaaataatatatat |
20861264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 49182217 - 49182185
Alignment:
| Q |
74 |
ttttttatttgaataatttagtataatgtgtaa |
106 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
49182217 |
ttttttatttgaataatttagtatattgtgtaa |
49182185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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