View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_high_35 (Length: 309)
Name: NF3992_high_35
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 34865321 - 34865037
Alignment:
| Q |
18 |
cattattgccaactagttcttctaataaagggtggatcataaaggttgaaaaatcgaaatctggcaaacttcgtcacttagatgttgtaactaacactca |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865321 |
cattatttccaactagttcttctaataaagggtggatcataaaggttgaaaaatcgaaatctggcaaacttcgtcacttagatgttgtaactaacactca |
34865222 |
T |
|
| Q |
118 |
tatgtcacacatgttcccgtctaatgtgttagatttcatgaacttacgagttaaggaattgtttcaagcatatactatcaatttttctagagatggaggt |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865221 |
tatgtcacacactttcccgtctaatgtgttagatttcatgaacttacgagttatggaattgtttcaagcatatactatcaatttttctagagatggaggt |
34865122 |
T |
|
| Q |
218 |
gatttaattgcatttgagcccctttctgatgtttataaagtagtgttgttttctgttgagggtctcggtcagatggtctctgctc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
34865121 |
gatttaattgcatttgagcccctttctgatgtttataaagtagtgttgttttctgttgagggtcccggtcagatggtctttgctc |
34865037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 71 - 293
Target Start/End: Original strand, 51858221 - 51858443
Alignment:
| Q |
71 |
tcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacacatgttcccgtctaatgtgttagatttcatgaacttacgagtta |
170 |
Q |
| |
|
||||||||| |||||||||||||||||||| || | ||||||| ||| || ||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51858221 |
tcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagtta |
51858320 |
T |
|
| Q |
171 |
aggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaattgcatttgagcccctttctgatgtttataaagtagtgttgttttc |
270 |
Q |
| |
|
||||| ||||||||||| ||||| ||| |||||||||| |||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
51858321 |
aggaaatgtttcaagcacatactctcagtttttctagatatgggcgtggtttaattgcatttgagccccttaatggtgtttataaagtagtgttgttttc |
51858420 |
T |
|
| Q |
271 |
tgttgagggtctcggtcagatgg |
293 |
Q |
| |
|
||| |||||||||||||| |||| |
|
|
| T |
51858421 |
tgtcgagggtctcggtcaaatgg |
51858443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 9518485 - 9518284
Alignment:
| Q |
27 |
caactagttcttctaataaagggtggatcataaaggttgaaaaatcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcaca |
126 |
Q |
| |
|
|||||| || || |||||||||||||||||||||| ||||| || | ||||| |||||||||| | |||||||| | | | ||||| ||| || ||| | |
|
|
| T |
9518485 |
caactaattattttaataaagggtggatcataaagattgaagaaacaaaatccggcaaacttcatatcttagatgctttgaataacattcacatctcata |
9518386 |
T |
|
| Q |
127 |
catgttcccgtctaatgt-gttagatttcatgaacttacgagttaaggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaat |
225 |
Q |
| |
|
|| ||||| || | ||||||||||| ||| |||||||||| ||||||||||||||| | |||| ||||||||| || ||||||||||||||||| |
|
|
| T |
9518385 |
tat----ccgtcgaaagacgttagatttcacgaatttacgagttatggaattgtttcaagcgtgtactctcaattttt-taatgatggaggtgatttaat |
9518291 |
T |
|
| Q |
226 |
tgcattt |
232 |
Q |
| |
|
||||||| |
|
|
| T |
9518290 |
tgcattt |
9518284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 9515218 - 9515130
Alignment:
| Q |
144 |
tgttagatttcatgaacttacgagttaaggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaattgcattt |
232 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||||||| | | |||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
9515218 |
tgttagatttcacaaatttacgagttacggaattgtttcaaacgtgtactctcaatttttctaaagatggaggtgatttaactgcattt |
9515130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 34145310 - 34145464
Alignment:
| Q |
37 |
ttctaataaagggtggatcataaaggttgaaaaatcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacacatgttcccg |
136 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||| | |||||||| || |||||| | ||| |
|
|
| T |
34145310 |
ttctaatatagggtggatcataaaggttgaagaatcaaaatctggaaaatttcgtcacttagatgtcttgactaacacatccataacacacacataccca |
34145409 |
T |
|
| Q |
137 |
tctaatgtgttagatttcatgaacttacgagttaaggaattgtttcaagcatata |
191 |
Q |
| |
|
| || |||||||||||||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
34145410 |
ttcaacgtgttagatttcatgaacttgcgagtaagagaattgtttcaagcatata |
34145464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University