View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3992_high_37 (Length: 304)

Name: NF3992_high_37
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3992_high_37
NF3992_high_37
[»] chr5 (6 HSPs)
chr5 (1-303)||(17377676-17377978)
chr5 (10-213)||(17392793-17392997)
chr5 (225-303)||(17393030-17393110)
chr5 (220-267)||(17389722-17389769)
chr5 (10-52)||(17384082-17384124)
chr5 (59-164)||(17384143-17384248)
[»] chr1 (1 HSPs)
chr1 (80-213)||(26052557-26052689)
[»] chr2 (1 HSPs)
chr2 (14-52)||(15785027-15785065)
[»] chr3 (2 HSPs)
chr3 (12-48)||(32226939-32226975)
chr3 (12-48)||(32241577-32241613)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 17377676 - 17377978
Alignment:
Q  1 tcttcacccaaatttatcctcctgtccaaggatctctcccacatgtaagctgatttagtagttcctagatgtatgtctggtgttttcgttagtttcaata 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17377676 tcttcacgcaaatttatcctcctgtccaaggatctctcccacatgtaagctgattcagtagttcctagatgtatgtctggtgttttcgttagtttcaata 17377775  T
Q  101 cttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17377776 cttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattt 17377875  T
Q  201 tcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgccgttatagattatctttttctatctgttttcttaccaacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17377876 tcgcgatgagccaagcatcctttgtttgtattgagcataatttaccaagcttcttttgccgttatagattatcttttcctatctgttttcttaccaacct 17377975  T
Q  301 ttg 303  Q
    |||    
T  17377976 ttg 17377978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 17392793 - 17392997
Alignment:
Q  10 aaatttatcctcctgtccaaggatctctcccacatgtaagctgattt--agtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgctt 107  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |   || |||||||||||||||  |||||||||| ||||||||| ||| |  ||     
T  17392793 aaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttcctagatgtatacctggtgtttttgttagtttcgatattcacta 17392892  T
Q  108 ctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgat 207  Q
    ||||||||||||||||||| ||||||||||||||||  || ||| | || | ||||||||||| ||||||||||||||||||| ||| |||||||| |||    
T  17392893 ctactgaatttgatggtttgaacaatataggcttattcaagtcaatggttttccaatactttcatctttgcattgttttgttaactc-aattttcgtgat 17392991  T
Q  208 gagcca 213  Q
    ||||||    
T  17392992 gagcca 17392997  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 17393030 - 17393110
Alignment:
Q  225 tttgtattgagcataatttaccaagcttcttttgccgttatagatt--atctttttctatctgttttcttaccaacctttg 303  Q
    ||||||||||||||||||| ||| || || ||||| |||||||  |  ||||||||||||||||||| |||||||||||||    
T  17393030 tttgtattgagcataatttcccatgcatcctttgctgttatagcatggatctttttctatctgtttttttaccaacctttg 17393110  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 17389722 - 17389769
Alignment:
Q  220 ctttgtttgtattgagcataatttaccaagcttcttttgccgttatag 267  Q
    |||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  17389722 ctttgtatgtattgagcataatttaccaagcttcctttgctgttatag 17389769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 17384082 - 17384124
Alignment:
Q  10 aaatttatcctcctgtccaaggatctctcccacatgtaagctg 52  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  17384082 aaatttatcctcttgtccaaggatctctccctcatgtaagctg 17384124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 17384143 - 17384248
Alignment:
Q  59 tagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtct 158  Q
    ||||||| ||||||||  | ||| |||| |||| || ||||| || || |||||| |||||||||||  ||||||||||||||||  |||||| | ||||    
T  17384143 tagttcccagatgtataccgggtatttttgttacttacaatatttactactactggatttgatggttcgaacaatataggcttattcaaatcaatggtct 17384242  T
Q  159 gccaat 164  Q
     |||||    
T  17384243 accaat 17384248  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 26052689 - 26052557
Alignment:
Q  80 gtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgca 179  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||  ||||| | ||| |||||||||||| ||| ||||    
T  26052689 gtgtttttgttagtttcaatatttgctactactgaatttgatggtttgaacaatataggtttatactaatcaatggtccgccaatactttcatctgtgca 26052590  T
Q  180 ttgttttgttagctcaaattttcgcgatgagcca 213  Q
    ||||||||||| ||| |||||||| |||||||||    
T  26052589 ttgttttgttaactc-aattttcgtgatgagcca 26052557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 15785027 - 15785065
Alignment:
Q  14 ttatcctcctgtccaaggatctctcccacatgtaagctg 52  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  15785027 ttatcctcctgtccaaaaatctctcccacatgtaagctg 15785065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 32226939 - 32226975
Alignment:
Q  12 atttatcctcctgtccaaggatctctcccacatgtaa 48  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  32226939 atttatccttctgtccaaggatctctccgacatgtaa 32226975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 32241613 - 32241577
Alignment:
Q  12 atttatcctcctgtccaaggatctctcccacatgtaa 48  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32241613 atttatcctcctgtccaaggatctctccggcatgtaa 32241577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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