View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3992_high_4 (Length: 642)
Name: NF3992_high_4
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 35922548 - 35921908
Alignment:
| Q |
1 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35922548 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagacactttcttgggaagagggaga |
35922449 |
T |
|
| Q |
101 |
tgcattgaaaacacttttttcttcggctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccctat |
200 |
Q |
| |
|
|||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922448 |
tgcattgaaaacacattctttttctgctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccctat |
35922349 |
T |
|
| Q |
201 |
ggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggaatctccacataactcttata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922348 |
ggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggaatctccacataactcttata |
35922249 |
T |
|
| Q |
301 |
ctaaacccttaatattgtggcttaatggaggtaa--aaaatgcatcagaaactgttttcttcagttaacttttgttcttttgtatgcattttctannnnn |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35922248 |
ctaaacccttaatattgtggcttaatggaggtaaaaaaaatgcatcagaaactgttttctacagttaacttttgttcttttgtatgcattttctattttt |
35922149 |
T |
|
| Q |
399 |
nnatgttctttaatgtgtcattgtctatttaatatttgtttataaatagattattaattatacttgattgatgacataagttcattttcatagtagtgaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35922148 |
ttatgttctttaatgtgtcattgtctatttaatatttgtttataaatagattattaattatacttgattgatgacataagttcattttcatagtagtgaa |
35922049 |
T |
|
| Q |
499 |
acatgatagtatagttttacctaagaacaaatatcacttgatattgaactttatttttcttttgatttataaaatcacatgcaaaaacctggtcattgac |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35922048 |
acatgatagtatagttttacctaagaacaaatatcacttgatattgaactttatttttcttttgatttataaaatcacatgcaaaaacctgttcattgac |
35921949 |
T |
|
| Q |
599 |
atcatttgaactttactcttgataatatgatgatgtccatc |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
35921948 |
atcatttgaactttactcttgataatatgattatgaccatc |
35921908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 35941413 - 35941077
Alignment:
| Q |
1 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35941413 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagactctttcttgggaagagggaga |
35941314 |
T |
|
| Q |
101 |
tgcattgaaaacacttttttcttcggctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35941313 |
tgcattgaaaacacttttttcttcggctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccctat |
35941214 |
T |
|
| Q |
201 |
ggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggaatctccacataactcttata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| || |
|
|
| T |
35941213 |
ggagtgaattttgaccaatattcaggctatgtcacagttgatcctgagactggaagagaacttttctattattttgtggagtctccatgtaactcttcta |
35941114 |
T |
|
| Q |
301 |
ctaaacccttaatattgtggcttaatggaggtaaaaa |
337 |
Q |
| |
|
||||||| ||| |||| ||||| |||||||||||||| |
|
|
| T |
35941113 |
ctaaacctttagtattatggctcaatggaggtaaaaa |
35941077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 35916279 - 35915944
Alignment:
| Q |
1 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
35916279 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcctaagacactttcttgggaagagggaga |
35916180 |
T |
|
| Q |
101 |
tgcattgaaaacacttttttcttcggctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccctat |
200 |
Q |
| |
|
|||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35916179 |
tgcattgaaaacacattctttttctgctgcttatgttgcaccacctcaagaggagctaagactagcagacaagatcgtcacattgcctggtcaaccctat |
35916080 |
T |
|
| Q |
201 |
ggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggaatctccacataactcttata |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
35916079 |
ggagtaaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggagtctccatataactcttcca |
35915980 |
T |
|
| Q |
301 |
ctaaacccttaatattgtggcttaatggaggtaaaa |
336 |
Q |
| |
|
||||||| ||| || ||||| | ||||||||||||| |
|
|
| T |
35915979 |
ctaaacctttagtactgtggttcaatggaggtaaaa |
35915944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 35935863 - 35935508
Alignment:
| Q |
1 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggaga |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35935863 |
ttccttatagcaaagctagtcaagctgataaacttgatgagctttttctgtctagaaaatcacagaatcctcccaagactctttcttgggaagagggaga |
35935764 |
T |
|
| Q |
101 |
tgcattgaaaacacttttttcttcggctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccctat |
200 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35935763 |
agcattgaaaacactttcttcttctgctgcttatgttgcagcacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaacccgat |
35935664 |
T |
|
| Q |
201 |
ggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggaatctccacataactcttata |
300 |
Q |
| |
|
|| || ||||||||||||| || || ||||| || ||||| |||||||| ||||||| |||||| |||||||||||||| |||||| ||||||||| | |
|
|
| T |
35935663 |
ggtgtagattttgaccaatactctggttatgtgactgttgaacctgaggccggaagagcacttttttattattttgtggagtctccatataactcttcaa |
35935564 |
T |
|
| Q |
301 |
ctaaacccttaatattgtggcttaatggaggtaaaaaatgcatcagaaactgtttt |
356 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||| || ||| |||||||||| |
|
|
| T |
35935563 |
ctaaaccattagtattgtggctcaatggaggtaaaaatagcctcacaaactgtttt |
35935508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 35911892 - 35911500
Alignment:
| Q |
1 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggaga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| || ||||||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
35911892 |
ttccatattgcaaagctagtcaagctgataaacttgttgagtttattctgtctagaacctcacagaatcctcctaagactctttcatgggaagaggaaga |
35911793 |
T |
|
| Q |
101 |
tgcattgaaaacacttttttc---ttcggctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccc |
197 |
Q |
| |
|
|||||||||||||| || ||| ||| ||||| |||||| |||||||||||| ||||| | |||||||||||| | ||||||||||||||||||| |
|
|
| T |
35911792 |
tgcattgaaaacacattcttcgttttctactgctgatgttg---cacctcaagaggggctaatgcaagctgacaagattgacacattgcctggtcaaccc |
35911696 |
T |
|
| Q |
198 |
tatggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggaatctccacataactctt |
297 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
35911695 |
tatggggtaaattttgaccaatattcaggctatgtcacagttgatcctgaggctggtagagaacttttctattattttgtggagtctccatataactctt |
35911596 |
T |
|
| Q |
298 |
atactaaacccttaatattgtggcttaatggaggtaaaaaatgcatcagaaactgttttcttcagttaacttttgttcttttgtatgcattttcta |
393 |
Q |
| |
|
|||||||| ||| |||| ||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
35911595 |
ccactaaacctttagtattatggctcaatggaggtaaaaattgcattagaaactgtttttcacagttaacttttgttcttttgtaggcattttcta |
35911500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 35929220 - 35928839
Alignment:
| Q |
1 |
ttccatatagcaaagctagtcaagctgataaactcaatgagtttattctttctagaaaatctcagaatcctcccaagactctttcttgggaagagggaga |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
35929220 |
ttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaaga |
35929121 |
T |
|
| Q |
101 |
tgcattgaaaacacttttttcttcggctgcttatgttgcaccacctcaagaggagctaagactagctgacaagatcgtcacattgcctggtcaaccctat |
200 |
Q |
| |
|
||||| |||||| || |||| ||| |||||||| | || |||||||| |||||| | |||||||||||| | |||||||||||||||||| ||| |
|
|
| T |
35929120 |
tgcatctaaaacagattcttct---gctccttatgttacgcc---tcaagaggggctaaggcaagctgacaagattgacacattgcctggtcaaccatat |
35929027 |
T |
|
| Q |
201 |
ggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaacttttctattattttgtggaatctccacataactcttata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
35929026 |
ggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggctggaagagagcttttctattattttgtggagtctccatataactcttcca |
35928927 |
T |
|
| Q |
301 |
ctaaacccttaatattgtggcttaatggaggtaaaaaatgcatcagaaactgttttcttcagttaacttttgttcttttgtatgcatttt |
390 |
Q |
| |
|
||||||| ||| | |||||||| |||||||||| ||| ||| || ||||| |||| | | | ||||||||||| ||||||||||||||| |
|
|
| T |
35928926 |
ctaaacctttagttttgtggctcaatggaggtataaattgcctc--aaacttttttatgctgataacttttgttattttgtatgcatttt |
35928839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 436 - 564
Target Start/End: Complemental strand, 35911260 - 35911133
Alignment:
| Q |
436 |
gtttataaatagattattaattatacttgattgatgacataagttcattttcatagtagtgaaacatgatagtatagttttacctaagaacaaatatcac |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||||||| |||||| ||||| ||||| |
|
|
| T |
35911260 |
gtttataaatagattattaattatacttgattgatgacataagttcattttcgtagtactgaaa-atgataatatagtttaacctaaagacaaacatcac |
35911162 |
T |
|
| Q |
536 |
ttgatattgaactttatttttcttttgat |
564 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
35911161 |
ttgatattgaatattatttttcttttgat |
35911133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 569
Target Start/End: Complemental strand, 35915749 - 35915620
Alignment:
| Q |
437 |
tttataaatagattattaattatacttgattgatgacataagttcattttcatagtagtgaaacatgatagtatagttttacctaagaacaaatatcact |
536 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||| | |||||||||||||||||||| ||| |||||||| |||||| | |||||||||| |
|
|
| T |
35915749 |
tttatatatagattattagttatatttgattgatgacataactacattttcatagtagtgaaac---ataatatagtttaacctaaagaaaaatatcact |
35915653 |
T |
|
| Q |
537 |
tgatattgaactttatttttcttttgatttata |
569 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||| |
|
|
| T |
35915652 |
tgattttgaatattatttttcttttgatatata |
35915620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 35928700 - 35928659
Alignment:
| Q |
462 |
ttgattgatgacataagttcattttcatagtagtgaaacatg |
503 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
35928700 |
ttgattgatgacataacttgattttcatagtagtcaaacatg |
35928659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 390
Target Start/End: Complemental strand, 35915901 - 35915873
Alignment:
| Q |
362 |
gttaacttttgttcttttgtatgcatttt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35915901 |
gttaacttttgttcttttgtatgcatttt |
35915873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 502
Target Start/End: Complemental strand, 35935257 - 35935217
Alignment:
| Q |
462 |
ttgattgatgacataagttcattttcatagtagtgaaacat |
502 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
35935257 |
ttgatcgataacataacttcattttcatagtagtgaaacat |
35935217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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