View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_43 (Length: 291)
Name: NF3992_high_43
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_43 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 44466552 - 44466304
Alignment:
| Q |
43 |
tcaccatatttgaatggtctaaatgtaagttttcgaacaatttatgcataaggaccatgttttctatagttagtatagtttgaaaataccgatcgagttt |
142 |
Q |
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| T |
44466552 |
tcaccatatttgaatggtctaaatgtaagttttcgaacaatttatgcataaggaccatgttttctatagttagtatagtttaaaaataccaatcgagttt |
44466453 |
T |
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| Q |
143 |
gacgctatgtcggtgaggcatgttcatgttattcgacagagaatatacgaagaaatgcatggatgaacacgaacaaggaattagattgtcgcatcctcat |
242 |
Q |
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| T |
44466452 |
gacgctatgttggtgaggcatgttcatgttattcgacagagaatatacgaagaaatgcatggatgaacacgaacaaggaattagattgtctcatcctcat |
44466353 |
T |
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| Q |
243 |
ccatggtcttttttgtctttaattatattgttgcaattatcactgttgt |
291 |
Q |
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| T |
44466352 |
ccatggtcttttttgtctttaattatattgttgcaattaccattgttgt |
44466304 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 30374929 - 30374970
Alignment:
| Q |
249 |
tcttttttgtctttaattatattgttgcaattatcactgttg |
290 |
Q |
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| T |
30374929 |
tcttgtttgtgtttaattatattgttgcaattatcattgttg |
30374970 |
T |
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