View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_45 (Length: 286)
Name: NF3992_high_45
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 643585 - 643725
Alignment:
| Q |
128 |
tcatacacctaattaataactgaactatatatacataataacaaagttgaatattctctactagtttttaatttgtggtttattttcaccaaatcattgc |
227 |
Q |
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| T |
643585 |
tcatacacctaattaataactgaactatatatacataataacaaagttgaatattctctactagtttttaatttgtggtttattttcaccaaatcattgc |
643684 |
T |
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| Q |
228 |
agaatttgggaaggatttgcacgggtcgatacaatgcaccg |
268 |
Q |
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| T |
643685 |
agaatttgggaaggatttgcacgggtcgatacaatgcaccg |
643725 |
T |
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Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 643434 - 643561
Alignment:
| Q |
1 |
gattccaaaatctgccaactagaagtatcatcttcacttaattttgggtgagcaaattaagattggagccaaaaagattaccttattatattcacttagt |
100 |
Q |
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| T |
643434 |
gattccaaaatctgccaactagaagtatcatcttcacttaattttgggtgagcaaattaagattggagccaaaaagattaccttattatattcacttagt |
643533 |
T |
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| Q |
101 |
tgtttgcttaatataaaacatacatggt |
128 |
Q |
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| T |
643534 |
agtttgcttaatataaaacatacatggt |
643561 |
T |
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