View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3992_high_46 (Length: 283)
Name: NF3992_high_46
Description: NF3992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3992_high_46 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 52145695 - 52145946
Alignment:
| Q |
18 |
cttaggagcttaaccacggtgccaattggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
52145695 |
cttaggagcttaaccacggtgccaattggcaagcatagcaaattgaacagaaagtctattacagattttgaagcttcagcaaagagaactttctcattct |
52145794 |
T |
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| Q |
118 |
ttgtatctataagaagcttcaaagacactttggtggtagaagaagaagaagccatattggtattgaaagttaatcgtactgtactacattagaagcaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52145795 |
ttgtatctataagaagcttcaaagacactttggtggtagaagaagaagaagccatattggtattgaaagttaatagtactgtactacattagaagcaaat |
52145894 |
T |
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| Q |
218 |
attaacccaaagagttgcgtgtggttgttgcaaaaataattaattaaagagt |
269 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52145895 |
attaacccaaagagttgcgtgtggttgttgcacaaataattaattaaagagt |
52145946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 52142177 - 52142321
Alignment:
| Q |
18 |
cttaggagcttaaccacggtgccaattggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattct |
117 |
Q |
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| T |
52142177 |
cttagcagcttcacaacagtgccgattggcaaacatagcaagttgaaaagaaagtctacgacagcttttgaagcttcagcaaagagaactttctgattct |
52142276 |
T |
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| Q |
118 |
ttgtatctataagaagcttcaaagacactttggtggtagaagaag |
162 |
Q |
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| T |
52142277 |
ttgtgtcgataagaagcttcatggagactttggtggaagaagaag |
52142321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 17522410 - 17522266
Alignment:
| Q |
18 |
cttaggagcttaaccacggtgccaattggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattct |
117 |
Q |
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||||| ||||| || || ||||| ||||||||||||||||| ||||| |||||||| | |||| |||| ||||||| |||||||||||||||| ||||| |
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| T |
17522410 |
cttagtagcttcacaacagtgccgattggcaagcatagcaagttgaaaagaaagtcaaccacagcttttgaagcttcagcaaagagaactttctgattct |
17522311 |
T |
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| Q |
118 |
ttgtatctataagaagcttcaaagacactttggtggtagaagaag |
162 |
Q |
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| T |
17522310 |
ttgtgtcgataagaagcttcatggacactttggtggaagaagaag |
17522266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 17020216 - 17020090
Alignment:
| Q |
54 |
agcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagacact---ttgg |
150 |
Q |
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|||| |||||| ||||| ||||| |||| |||| | ||||| ||||| ||||||||||||||| | || || |||||||| || | | |||| |||| |
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| T |
17020216 |
agcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttgg |
17020117 |
T |
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| Q |
151 |
tggtagaagaagaagaagccatattgg |
177 |
Q |
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||| ||||| ||||||||||||||||| |
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| T |
17020116 |
tggaagaagtagaagaagccatattgg |
17020090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 17550653 - 17550527
Alignment:
| Q |
54 |
agcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagacact---ttgg |
150 |
Q |
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|||| |||||| ||||| ||||| |||| |||| | ||||| ||||| ||||||||||||||| | || || |||||||| || | | |||| |||| |
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| T |
17550653 |
agcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttgg |
17550554 |
T |
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| Q |
151 |
tggtagaagaagaagaagccatattgg |
177 |
Q |
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||| ||||| ||||||||||||||||| |
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| T |
17550553 |
tggaagaagtagaagaagccatattgg |
17550527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 17017000 - 17017121
Alignment:
| Q |
45 |
ggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagaca |
144 |
Q |
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||||||||||||| ||||| |||||||||| || | ||| | ||||| |||||||||||| | ||| ||||||| || |||||||| || | | || |
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| T |
17017000 |
ggcaagcatagcatgttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtca |
17017099 |
T |
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| Q |
145 |
ctttggtggtagaagaagaaga |
166 |
Q |
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||||||||| ||||||||||| |
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| T |
17017100 |
gtttggtggtggaagaagaaga |
17017121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 17547437 - 17547558
Alignment:
| Q |
45 |
ggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagaca |
144 |
Q |
| |
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||||||||||||| ||||| |||||||||| || | ||| | ||||| |||||||||||| | ||| ||||||| || |||||||| || | | || |
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| T |
17547437 |
ggcaagcatagcatgttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtca |
17547536 |
T |
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| Q |
145 |
ctttggtggtagaagaagaaga |
166 |
Q |
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| T |
17547537 |
gtttggtggtggaagaagaaga |
17547558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 18094 - 17952
Alignment:
| Q |
24 |
agcttaaccacggtgccaattggcaagcatagcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtat |
123 |
Q |
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||||| || ||| |||| || ||||||||||||| ||||| ||||||||||| || | ||| | ||||| |||||||||||| | ||||||||||| | |
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| T |
18094 |
agctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtctataacgggtttagatgcttcagcaaagagaactctttcattctttgtgt |
17995 |
T |
|
| Q |
124 |
ctataagaagcttcaaagacactttggtggtagaagaagaaga |
166 |
Q |
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| T |
17994 |
caataagaagtttgagggtcagtttggtggtggaagaagaaga |
17952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 9054 - 9180
Alignment:
| Q |
54 |
agcaaattgaacagaaagtctattacagatttttaagcttcggcaaagagaactttctcattctttgtatctataagaagcttcaaagacact---ttgg |
150 |
Q |
| |
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|||| |||||| ||||| ||||| |||| |||| | ||||| ||||| ||||||||||||||| | || || || ||||| || | | |||| |||| |
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| T |
9054 |
agcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttgg |
9153 |
T |
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| Q |
151 |
tggtagaagaagaagaagccatattgg |
177 |
Q |
| |
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||| ||||| ||||||||||||||||| |
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| T |
9154 |
tggaagaagtagaagaagccatattgg |
9180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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